Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00158 ATGGTGTCGGTGAACCCAAACCCCGCGCAAGGCTTTTACTTCTTCGATCCCTCCAATATGACCCTTCCTGGCGTCAATTCTCTTCCGCCGCCACCGCCGCCGACGCAGACTCCAGCTGCTCCACTCGCTGTGGAGGATCCAAATAAGAAGATCCGGAAACCCTACACGATTACCAAGTCCAGGGAGAGCTGGACCGAGCAGGAGCACGACAAATTTCTAGAAGCTCTCCAATTATTTGATCGGGACTGGAAAAAGATTGAAGCATTTGTTGGTTCAAAAACTGTAATCCAGATAAGAAGTCATGCACAGAAGTATTTTCTTAAAGTTCAAAAGAATGGAACAAGTGAACATGTTCCTCCTCCTCGGCCAAAGAGAAAAGCTACTCACCCATACCCTCAAAAGGCTCCTAAAATCACTCCAACTGTATCTCAAGTTATGGGCCCACTGCAACCTTCATCCGCTTTCATTGAACCTGCATATATATATAGCCCGGATTCTTCTTCTGTTCTTGGAACACCAGTTACTAACATGCCTTTGTCGACTTGGAATTATAATGCTAAACCACCAGTCAATGTGCCACAAGTGACTAAAGACGATGTGGGATTGACCAGACCAGCACAAGCTGTTCCTCTTAACTGTTGCTATAGCAGTAGTAATGAGAACACTCCTCCGACTTGGCCAAGTAGCAAAAAGATTAATCAAGGTGGCCAGGGCAAGAAAATTAAAGTAATGCCAGATTTTTCTCAAGTCTACAGCTTCATAGGAAGTGTTTTTGATCCAAATTCAACTAATCACCTACAGAAACTAAGACAGATGGACCCAATAAATGTGGAAACGGTATTGTTGTTGATGAGAAATCTCTCGGTCAATTTAATGAGTCCAGAGTTTGAGGATCATAAGAGGCTGCTTTCATCATATGATACCGACTCTGATAATAAGTCGAAGCTTGTTAATATTTGCAGCAAATCTCTCACTAATAAATCTGAGAGTGCTATTCTGTCTGCATAA 1008 0.4315 MVSVNPNPAQGFYFFDPSNMTLPGVNSLPPPPPPTQTPAAPLAVEDPNKKIRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKNGTSEHVPPPRPKRKATHPYPQKAPKITPTVSQVMGPLQPSSAFIEPAYIYSPDSSSVLGTPVTNMPLSTWNYNAKPPVNVPQVTKDDVGLTRPAQAVPLNCCYSSSNENTPPTWPSSKKINQGGQGKKIKVMPDFSQVYSFIGSVFDPNSTNHLQKLRQMDPINVETVLLLMRNLSVNLMSPEFEDHKRLLSSYDTDSDNKSKLVNICSKSLTNKSESAILSA* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00158 335 SMART sant 60 108 IPR001005 -
Lapu10g00158 335 Gene3D - 64 111 - -
Lapu10g00158 335 NCBIfam myb-like DNA-binding domain, SHAQKYF class 59 108 IPR006447 GO:0003677
Lapu10g00158 335 FunFam protein REVEILLE 6 isoform X1 63 111 - -
Lapu10g00158 335 Pfam Myb-like DNA-binding domain 61 106 IPR001005 -
Lapu10g00158 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Lapu10g00158 335 PANTHER SWI/SNF COMPLEX-RELATED 34 292 - -
Lapu10g00158 335 MobiDBLite consensus disorder prediction 23 54 - -
Lapu10g00158 335 CDD SANT 63 106 IPR001005 -
Lapu10g00158 335 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Lapu10g00158 335 SUPERFAMILY Homeodomain-like 55 111 IPR009057 -
Lapu10g00158 335 MobiDBLite consensus disorder prediction 112 138 - -
Lapu10g00158 335 MobiDBLite consensus disorder prediction 24 40 - -
Lapu10g00158 335 ProSiteProfiles SANT domain profile. 59 112 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00158 Lapu-Chr10 3351679 3358976 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lapu10g00158 Myb_DNA-binding 2.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00158 - - gmx:778090 588.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00158 10 3351679 3358976 Lapu10g00158 10 3351679 3358976 ECH