Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00149 ATGGCAGCTGTTAGGGCTTCCTCTGTAAGAGGAATAGGAAGTAAAATCAAGGTTTCTTTCAATATGGAATTAGTTCAGCACTGTCAGTATCACCATAGTGTGTGTGTGAACCTTGCGAGATTGCCAAATGATTCACGGAGTCTTCCTTATTACAAAAGAGAGTTACAGTCTATTAAGAATCAGTTTAGTAATTTGGCTTCTGAATCCTTTAGAAGTAGTCACCAATTTGGTACTAGAGCCAATGTATCGTTTAATCCTAGATTCTCTGGCTATTGTTTTCGGAGTGCCCTTCCTTTTGCTTCGGCTTGCCACGTGTTGAATCGCCGATTTTATTCGTCGACGGTGGGTGGTGACAAAGGAAGTAGAGATGGTGGTACAGAAGTCTCTGCTGGTTCTGGTGCGAGTGACATGAATACCGCTGGCGATTCTGTTGTTGGGGGTGATTGGGCTGAGAGGATTAAAGATGCTTGGAAGAGTGTGGTAGAGTCAGCATCAGATGCTGGGGAAAAGGTTAAAGCAACATCCGATGATCTCACTCCGTATGCTCAGCAGTTGCTTGATTCACACCCATATCTCAACAAGGTGGTTATTCCAGTTGGTGGTACTTTAACTGCTACTCTGATAGCTTGGTTCTTGATGCCTATGATTTTGAGGAAATTTCACAGATATGCAATGCGAGGTCCCGTTTCTCTACTGCCAGCAAGCATGTCTGGAGATCCGTATCCTTATGAGAAAAGCTTTTGGGGTGCAATGGAGGATCCAGTGCGATATTTAGTTACCTTCATCGCATTCTCACAAATTGGTGTAATGGTAGCTCCAACAACTATAACTGCAGAATATCTTGCCCCAGTTTGGAGGGGTGCAGTGATAGTTTCATTTGTATGGTTTTTGCATAGATGGAAAACAAATGTTTTTGCACGGACATTGTCCAGTCAAAGTTTACTTGGACTTGATAGGGAGAAAATGCTCGCTCTAGACAAAATCTCATCTATTGGTCTATTTGTGATTGGTATAATGGCTTTTGCTGAGGCTTGTGGTGTGGCCGTGCAATCTATTGTTACTGTTGGTGGTATAGGAGGAGTGGCTACTGCTTTCGCTGCCAAGGACATTCTTGGCAACGTGTTTAGTGGTTTATCTATGCAGTTTTCTAAGCCCTTTTCAGTTGGAGATACAATAAAAGCAGGCTCGATTGAGGGTCAAGTGCTGGAAATGGGTCTTACTACCACATCTTTGCTGAGTTCAGAGAAGTTTCCAGTCATTGTTCCAAACTCATTTTTTTCTAGCCAGGTTATTGTGAACAAGTCCCGTGCTGAATATCGTGCCATTATTTCCAAAATTCCTCTGCAAACTGAGGATTTAAGTAAGATTCCCCAGATATCAGATGATGTAAAAAGCATGCTCAAATCAAACGCAAAGGTTTTCTTAGGGAAAGATGTTCCCTACTGTTTCTTATCCCGTATAGAAAGTTCATATGCAGAACTGACTCTTGGATACAACCTCAAACATATGCGCAAAGATGAACTATACTCGGCTGAACAAGAAATTCTGCTGCTGGCAGTTCAGATCATTAAAAATCATGGGGTTGCTCTTGGCAGCACATGGCAAGAAACGCCTTCGAAATGA 1623 0.4245 MAAVRASSVRGIGSKIKVSFNMELVQHCQYHHSVCVNLARLPNDSRSLPYYKRELQSIKNQFSNLASESFRSSHQFGTRANVSFNPRFSGYCFRSALPFASACHVLNRRFYSSTVGGDKGSRDGGTEVSAGSGASDMNTAGDSVVGGDWAERIKDAWKSVVESASDAGEKVKATSDDLTPYAQQLLDSHPYLNKVVIPVGGTLTATLIAWFLMPMILRKFHRYAMRGPVSLLPASMSGDPYPYEKSFWGAMEDPVRYLVTFIAFSQIGVMVAPTTITAEYLAPVWRGAVIVSFVWFLHRWKTNVFARTLSSQSLLGLDREKMLALDKISSIGLFVIGIMAFAEACGVAVQSIVTVGGIGGVATAFAAKDILGNVFSGLSMQFSKPFSVGDTIKAGSIEGQVLEMGLTTTSLLSSEKFPVIVPNSFFSSQVIVNKSRAEYRAIISKIPLQTEDLSKIPQISDDVKSMLKSNAKVFLGKDVPYCFLSRIESSYAELTLGYNLKHMRKDELYSAEQEILLLAVQIIKNHGVALGSTWQETPSK* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00149 540 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 282 368 IPR011014 GO:0016020
Lapu10g00149 540 SUPERFAMILY Sm-like ribonucleoproteins 369 434 IPR010920 -
Lapu10g00149 540 Gene3D - 385 433 IPR023408 -
Lapu10g00149 540 Gene3D - 280 384 - -
Lapu10g00149 540 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 149 533 - -
Lapu10g00149 540 MobiDBLite consensus disorder prediction 115 141 - -
Lapu10g00149 540 Pfam Mechanosensitive ion channel 327 529 IPR006685 GO:0016020|GO:0055085
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00149 149 537 Mechanosensitive Ion Channel Family AT4G00290 66.324 0.0 562
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00149 K22047 - gmx:100789047 920.613