Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00148 ATGAGACAAGCTGGTGCATATTCACGGTTACTGTGTGGAGGGGTATCAGGAAGGACGGGGCCCCACTCTCTACCCTTGGCAAGGATCAAGAAGATCATGAAGAAGTCAGGGGATGATGTTAAAATGATATCAGGGGAGGCTCCAATTATTTTCTCCAAGGCTTGTGAGCTCTTCATTGAAGAACTTACCAGAAGGTCCTGGATCATGGCCATCCAAGGCAAAAGGAGGACTTTGCACAAAGAGGACTTGACCTCCGCAGTTATAGCCACTGATCTGTTTGACTTTTTGATCACTTTGGTTTCCACTTCAGACAGCCATGCACTTGGTGTCACCACCACTACCCTGCAGGCAGAAACTGTAGATTAG 366 0.4754 MRQAGAYSRLLCGGVSGRTGPHSLPLARIKKIMKKSGDDVKMISGEAPIIFSKACELFIEELTRRSWIMAIQGKRRTLHKEDLTSAVIATDLFDFLITLVSTSDSHALGVTTTTLQAETVD* 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00148 121 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 22 104 - -
Lapu10g00148 121 Gene3D Histone, subunit A 15 101 IPR009072 GO:0046982
Lapu10g00148 121 FunFam Nuclear transcription factor Y subunit C-3 15 101 - -
Lapu10g00148 121 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 87 IPR003958 -
Lapu10g00148 121 SUPERFAMILY Histone-fold 17 96 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00148 Lapu-Chr10 3264849 3265260 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00148 22 115 CCAAT-HAP5 Transcription Factor Family AT1G56170 55.208 9.33e-32 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Lapu10g00148 CBFD_NFYB_HMF 1.9e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00148 - - gmx:100777614 212.616