Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00141 ATGGGTTTTCCGGTGGGTTACGCGGAGGTGTTCTTCCCCAACCCCTTCCTCCACACACTGGCCTTCCTCGGCCTCCTCCGAAACGTTGTATTCTTTCTCTTCCACCTCCTCGGACTCTCTGACTTCCTTGAAACCGAGGTCACATGGCCGGATCCCCGCAACTCCGCCGCCACCGCCGCCGTATCCAGGCCCCCCTCCGTTTCGGCGCTACTCATCCGGGACATCCTCCCCGTCGCCAAGTTCGGAGAGTCCGGAGAAAACTCCTGTGCCTGCGCCGTCTGTTTGTTCGAGTTCTCCGAGGAGGAGGAGATTCGGTGCATGCGGAACTGCAAGCACATTTTCCACCGTGCCTGTGTGGACCGTTGGATCGATCACGATCAGAAAACGTGTCCTCTCTGTAGGACCCCCTTTGTACCGGATGACATGCTCGATGATTATAATCAACGCCTCTGGGCTGCTTCTGGGATCAACGAGTTTTACTCTGATTACACTTCTTCCTTCTGA 504 0.5655 MGFPVGYAEVFFPNPFLHTLAFLGLLRNVVFFLFHLLGLSDFLETEVTWPDPRNSAATAAVSRPPSVSALLIRDILPVAKFGESGENSCACAVCLFEFSEEEEIRCMRNCKHIFHRACVDRWIDHDQKTCPLCRTPFVPDDMLDDYNQRLWAASGINEFYSDYTSSF* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00141 167 SMART ring_2 91 133 IPR001841 -
Lapu10g00141 167 SUPERFAMILY RING/U-box 71 141 - -
Lapu10g00141 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 139 IPR013083 -
Lapu10g00141 167 Pfam Ring finger domain 90 134 IPR001841 -
Lapu10g00141 167 ProSiteProfiles Zinc finger RING-type profile. 91 134 IPR001841 -
Lapu10g00141 167 PANTHER RING ZINC FINGER PROTEIN-RELATED 25 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00141 Lapu-Chr10 3185775 3186597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00141 1 166 C3H Transcription Factor Family AT1G63840 44.509 1.15e-48 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00141 K16281 - gmx:100790975 311.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01528 1 28068821 28069518 Lapu10g00141 10 3185775 3186597 PCT