Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00136 ATGCTTTGCAAATTCAATTTCAAAAAGCAGCTTTGTTTCACTCCAACGGCGTATTCAGTTGTCACTCAATGCACCCATTCATGGAGCAACCTAAGAGCTTCTATGCAATTTCCTGATAAAACCTACCTCAGGGACCCTCACGCAGTTCATTTGCTTTATTCCAATGCCCTCAAAGTCTCCGCCAAATGGGCCCTTTTTCCTGAAGGAAAACAGTTACATGCCCATTTGATAAAGTTTGGATTTTGCCATGTTCTGTCCCTGCAAAATCAGATTTTGAGTATTTATCTTAAGTGTAAGGAAACTAAAGATGCACAGAAAGTGTTTGAGGAATTGCCTGTGAGAAATGTGGTTTCGTGGAACATTCTAATTCGAGGCATTGTTGGATGTGGCAATGCTATCGAAAATGACTCGAATCCAAAGTTCTGTTTTTCTTATTTTAAAAGGATGTTGTCGGAAATGGTGGTTCCGGATGGTACAACTTTGAATGGTCTCATTGGTGTTTGTGTAAAGTTTCATGATATTGACGTGGGTTTCCAGTTGCACTGTTTTGCAGTGAAACTGAGACTTGATTTGGATTGTTTTGTTGGAAGTGTTCTTGTTGATTTATATGCTAAATGTGGCATGGTGAAGAATGCAAGGAGGGTTTTTCATGATGTTCCACAAAGAGATTTGGTTATGTGGAATGTGATGATTTCTTGCTATGCCTTGAATCGTTCACCGGAAGAGGCTCTTGGAATGTTAAACTTGATGCGATTAGATGGTGCAAATGGAGACGAGTTCACTTTTAGCAGCGTGCTTAGTGTATGTGATACTTTGGAATATTATGATTTTGGAAGGCAGGTTCATGGTCATATTCTGAAACAGTCATTTGATTCAGATGTGTTAGTAGCTAGTTCATTGATTAACATGTATGCGAAAAATGAAAATATAATTGACGCACACAAACTATTTGATACGATGGTGATTAGAAATGTTGTGGCTTGGAACACCATTATTGTTGGGTGTGGGAATTGTGGAGAAGGGAATGAGGTTATGAAGCTTCTCAGAGAGATGCTTCACGAAGGGTTTTCCCCTGATGAACTAACTATTTCCAGCACTATTAGTTCATGTGGCTATGCTTGTGCCATTACTGAAACAATGCAAGTCCATGCTTTTGCAGTTAAATCATCATTTCAAGAATTTGTATCTGTTGCTAATTCTCTGATTAGTGCGTACTCCAAGTGTGGTAGCATAACTAATGCATGTAAATGCTTCAGATTAACTGCAAAACCTGATCTTGTTACGTGGACTTCATTGATAAATGCATATGCATTCCATGGTCTTGCCAAAGAAGCAACCGAAACATTTGAGAAGATGCTATCTTGTGGAGTAATTCCCGATCGAATTTCTTTTCTTGGTGTTCTCTCAGCTTGTTCCCATTCCGGGCTTGTGGCTAAGGGACTTCACTACTTTAACTTGATGACCAGTGTGTATCAGATTGTTCCTGAATCAGGGGATTATACCTGCCTAGTTGACCTTCTTGGAAGATATGGTCTTATAAATGAGGCTTTTGAATTCTTAAGGACAATGCCAATGGAAGCTGAATCGAACACATTAGGAGCATTTATTGGATCCTGCAATGTCCATGCAAATATAGGACTGGCTAAATGGGCTGCTGAAAAGCTCTTCATCATAGAACCAGAGAAGAGTGTAAACTATGCAGTCATGTCTAACATTTATGCTTCCCACAGACACTGGTGTGATAGCAGAACGCCGGGAAGAGTGCCCCCTTCTCCCGGATACGCCTCCTCCGAACTCAGCACCTCCACAGTCTCCAGCCGCCAGAACCCTGTTGTTGCCGCCGCAAGGTCCTTCACCGGAATTTTCTCCGCTTGCTTCTCGCCGCCGGAGTCCGATAACTCCAGGAGCATCGGGGACTCCGAGGAGTTTAAGTCTTCTTCCACTGCATCGAATGGTTCCAGAGCTGGTTCAAGAGCTGGTAGTCAGAGAGGGCGTAGCTCAAATGGAGGTTTGAGCATCAGTTCATACAACATAATACAAAGGAAAGAACCTGGCATTGTGAAGTTCACCATGGAAGAAATCTTCCAAGTCACAAGAAATTTCTCCCCTTCTTTCAAGATTGGCCAAGGTGGTTTTGGTGCCGTGTACAAGGCAAAACTCCTGGATGGGACTGTTGTTGCAGTAAAGCGTGCTAAGAAGAGTGTATATGAGAAACATTTGGGGGTGGAGTTCCAGAGCGAGATCCAAACACTATCCCGGGTGGAACATTTGAACTTGGTTAAGTTCTATGGATATTTGGAGCAGGCGGATGAAAGGATCATTGTCGTTGAGTATGTTCCAAATGGAACCCTCAGAGAACATTTAGATTGCATTCATGGAAGCGTTCTGGACCTTACTGCACGTCTGGATGTAGCAATTGATGTTTCTCATGCTATCACCTATCTTCATATGTATATAGATCATCCTATCATTCACAGAGACATAAAATCTTCAAACATTCTTCTCACTGAACATTTTCGAGCTAAGGTAGCAGACTTTGGTTTTGCTAGACAAGCCCCGGACAGTGACTCTGGAATGACACATGTTTCCACCCAAGTCAAAGGAACAGCTGGCTACTTGGATCCTGAATACCTGAAAACTTATCAACTAACTGAAAAGAGTGATGTGTATTCATTTGGAGTTTTGCTTGTTGAACTTGTCACAGGCAGACGCCCCATTGAACCAAAATTTGAACTCAAGGAGCGAATCACGGCAAAGTGGGCTATGAAGAGGTTCATCGAGGGAGATACTATCTCGGTCTTGGACCCAAGACTGGATCAGACTGCTGCAAACACTTTGGCAATACAAAAGATTCTGGAGCTAGCTTTACAGTGTTTGGCTCCACGTAGACAAAGCAGGCCTACTATGAAAAGATGTGCCGAAGTCCTTTGGTCCATCCGCAAGGATTTCAGAGAGGAGTTATCAGCTTCAAACTTTCGCTCATTTTCCACTACTTCCCAAAGGAGCACCTCACTGAGAGAGTGA 3024 0.4246 MLCKFNFKKQLCFTPTAYSVVTQCTHSWSNLRASMQFPDKTYLRDPHAVHLLYSNALKVSAKWALFPEGKQLHAHLIKFGFCHVLSLQNQILSIYLKCKETKDAQKVFEELPVRNVVSWNILIRGIVGCGNAIENDSNPKFCFSYFKRMLSEMVVPDGTTLNGLIGVCVKFHDIDVGFQLHCFAVKLRLDLDCFVGSVLVDLYAKCGMVKNARRVFHDVPQRDLVMWNVMISCYALNRSPEEALGMLNLMRLDGANGDEFTFSSVLSVCDTLEYYDFGRQVHGHILKQSFDSDVLVASSLINMYAKNENIIDAHKLFDTMVIRNVVAWNTIIVGCGNCGEGNEVMKLLREMLHEGFSPDELTISSTISSCGYACAITETMQVHAFAVKSSFQEFVSVANSLISAYSKCGSITNACKCFRLTAKPDLVTWTSLINAYAFHGLAKEATETFEKMLSCGVIPDRISFLGVLSACSHSGLVAKGLHYFNLMTSVYQIVPESGDYTCLVDLLGRYGLINEAFEFLRTMPMEAESNTLGAFIGSCNVHANIGLAKWAAEKLFIIEPEKSVNYAVMSNIYASHRHWCDSRTPGRVPPSPGYASSELSTSTVSSRQNPVVAAARSFTGIFSACFSPPESDNSRSIGDSEEFKSSSTASNGSRAGSRAGSQRGRSSNGGLSISSYNIIQRKEPGIVKFTMEEIFQVTRNFSPSFKIGQGGFGAVYKAKLLDGTVVAVKRAKKSVYEKHLGVEFQSEIQTLSRVEHLNLVKFYGYLEQADERIIVVEYVPNGTLREHLDCIHGSVLDLTARLDVAIDVSHAITYLHMYIDHPIIHRDIKSSNILLTEHFRAKVADFGFARQAPDSDSGMTHVSTQVKGTAGYLDPEYLKTYQLTEKSDVYSFGVLLVELVTGRRPIEPKFELKERITAKWAMKRFIEGDTISVLDPRLDQTAANTLAIQKILELALQCLAPRRQSRPTMKRCAEVLWSIRKDFREELSASNFRSFSTTSQRSTSLRE* 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00136 1007 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 425 459 IPR002885 -
Lapu10g00136 1007 NCBIfam pentatricopeptide repeat 225 254 IPR002885 -
Lapu10g00136 1007 NCBIfam pentatricopeptide repeat 427 460 IPR002885 -
Lapu10g00136 1007 NCBIfam pentatricopeptide repeat 326 360 IPR002885 -
Lapu10g00136 1007 FunFam Pentatricopeptide repeat-containing protein chloroplastic 175 275 - -
Lapu10g00136 1007 Gene3D Tetratricopeptide repeat domain 393 588 IPR011990 GO:0005515
Lapu10g00136 1007 Gene3D Transferase(Phosphotransferase) domain 1 779 1000 - -
Lapu10g00136 1007 SUPERFAMILY Protein kinase-like (PK-like) 678 979 IPR011009 -
Lapu10g00136 1007 Pfam Protein kinase domain 706 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu10g00136 1007 Gene3D Phosphorylase Kinase; domain 1 667 778 - -
Lapu10g00136 1007 FunFam Pentatricopeptide repeat-containing protein mitochondrial 46 172 - -
Lapu10g00136 1007 FunFam Pentatricopeptide repeat-containing protein chloroplastic 276 376 - -
Lapu10g00136 1007 MobiDBLite consensus disorder prediction 628 668 - -
Lapu10g00136 1007 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 2 660 778 - -
Lapu10g00136 1007 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 28 583 IPR046960 GO:0003723|GO:0009451
Lapu10g00136 1007 ProSitePatterns Protein kinases ATP-binding region signature. 707 733 IPR017441 GO:0005524
Lapu10g00136 1007 ProSiteProfiles Protein kinase domain profile. 701 978 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu10g00136 1007 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 779 990 - -
Lapu10g00136 1007 CDD STKc_IRAK 707 976 - -
Lapu10g00136 1007 SMART serkin_6 701 978 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu10g00136 1007 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 223 257 IPR002885 -
Lapu10g00136 1007 ProSitePatterns Serine/Threonine protein kinases active-site signature. 823 835 IPR008271 GO:0004672|GO:0006468
Lapu10g00136 1007 Pfam PPR repeat family 323 370 IPR002885 -
Lapu10g00136 1007 Pfam PPR repeat family 424 472 IPR002885 -
Lapu10g00136 1007 Pfam PPR repeat 225 254 IPR002885 -
Lapu10g00136 1007 Pfam PPR repeat 198 221 IPR002885 -
Lapu10g00136 1007 Pfam PPR repeat 500 524 IPR002885 -
Lapu10g00136 1007 Pfam PPR repeat 399 419 IPR002885 -
Lapu10g00136 1007 Gene3D Tetratricopeptide repeat domain 183 274 IPR011990 GO:0005515
Lapu10g00136 1007 Gene3D Tetratricopeptide repeat domain 47 182 IPR011990 GO:0005515
Lapu10g00136 1007 Gene3D Tetratricopeptide repeat domain 275 382 IPR011990 GO:0005515
Lapu10g00136 1007 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 324 358 IPR002885 -
Lapu10g00136 1007 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 396 587 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00136 Lapu-Chr10 3103531 3114520 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00136 91 582 Glycoside Hydrolase AT3G49170 33.200 8.51e-84 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Lapu10g00136 Pkinase 1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00136 - - ccaj:109802654 1014.22