Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00135 ATGGGAGGTTGCTGTTGTTCTGCCAGGAAACCTCACCTGCATGGGACACCAGTGTATTACTATTGCCCACCAACTTTAGAAGAGCGTGAGTCTTTAACATCTAATGATGGTACGACTACTTCACTCACTACTGGATTGCTAGTAGGCTTGAACCTGGAAACTTCCTCACCTGATACATACCAGCCCCCTCCTGCACCTCTACCTTATGATGTGGTCCTGGGAGGTCCAGCATCAACAGATTCTGAATCAGGCAGAGAAACAGTCAGTGCTAATGGCTTTGAGACATTAACTACATGTGAAGATATTGAAGAATCTGACTGTAAAGCTAAAGCTAATTCAACACCTATATCTCCAAGCAAGGCAGAACTGTCAAAATCAAAAGAATTTCATGTATTAGTGATAGAAGAAGAGGACGACTGTCCAATTTGTCTTGATGAATATGATGTTGAGAATCCTAAAACTCTGACAAAATGTGAACACCACTTTCACTTGTCTTGCATTCTGGAGTGGATGGAAAGAAGTGACTTCTGTCCTATATGTGATCAGGAGATGATATTTGACCAGACACTGAACTAG 576 0.4201 MGGCCCSARKPHLHGTPVYYYCPPTLEERESLTSNDGTTTSLTTGLLVGLNLETSSPDTYQPPPAPLPYDVVLGGPASTDSESGRETVSANGFETLTTCEDIEESDCKAKANSTPISPSKAELSKSKEFHVLVIEEEDDCPICLDEYDVENPKTLTKCEHHFHLSCILEWMERSDFCPICDQEMIFDQTLN* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00135 191 ProSiteProfiles Zinc finger RING-type profile. 140 181 IPR001841 -
Lapu10g00135 191 SMART ring_2 140 180 IPR001841 -
Lapu10g00135 191 Pfam Ring finger domain 138 180 IPR001841 -
Lapu10g00135 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 187 IPR013083 -
Lapu10g00135 191 FunFam Putative E3 ubiquitin-protein ligase RHB1A 116 185 - -
Lapu10g00135 191 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 36 188 - -
Lapu10g00135 191 SUPERFAMILY RING/U-box 133 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00135 Lapu-Chr10 3090843 3094527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00135 1 191 C3H Transcription Factor Family AT4G00335 59.686 2.16e-79 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00135 - - gmx:100804435 347.051