Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00133 ATGTCCATGGCAGGGCGGTTGCTGTTCGACGACGGTGTTCGCGAAGAAGATAGTGGTGGCATTGTTGGGGGCTCGAACGACGATTCTTTGTGCCGTTTTGAGAGGCTGTTTCCGGAGTTCTTCAGTGAGATCTGTGTGTTTAATTGCGTTTTGCCTTATCCTCCAATGCTGTCTGATGGGCAGGACGTGGATTTGTATAGGTTGTTTTTGGTGGTGAGAGGGAAGGGTGGATACGATGCCGTTTGCAATGGGAAGTTGTGGGATTCGGTTGGGGAGGAGTCTGGGATGGGTGTGAGTGTTGGGTCCTCTGTTGAGTTGGTTTACAGTCGGTACTTGAGTGCTTTGGATTCATGGATGAAGAAAGTTGCTGAGAGTAAGGTGTCTCCCGAGTGTGGTGTGGTGGATAATAGGGATAAGTTTGGGAGGCGGTTGATGGAGTTGCAGGCTGAGGTGGAAGGGTTGTTTTCCGGTTGTGCAGAGGATAGGGTGGTTGTTGCCGGAGAGGATGTCGAGGGTGGACTTGATGAAGATGATCACATCTTGGATCGGAGGGAGTTATGTGGTGCTAATGGGGTGAAAGGTAGTGGTGATGAAGGAGGTGAACATGGAGAATGTTCTGATTCGGAGACGCCGGACCATGACATGAATGAGGCCATTCTTGGAAACTCGGATAAGGGAAATGGTGCAATGGGACGGGAGGAAGGGTTTGATAGAGGGAAAATGACTGAAGAGCAGGCTGTGGATATATCAGATGGAGCTAACAACAGTGGGGCTGAATTGCTGAGTGGAGGCAAGAAGTGTGAGGACTATGATGATAAGGGCGTGGTGTTGGATGCATCCGGTGGTAATAGTGGTGATGGTGATAGTTCTGGTCACAAGAGGAAGAGAGAGGGATCTGTGTTGGATTCATCTAGTGATGATAGTGATAGTCCTAGTCGTAAGAGGATGCGAGAGTCTGCAATGGATATGCTGAGCTGGGTTACAGGTGTTGCAAAGAATCCTAGTGAGCCTGAAGTTGGTTCAATACCTGAAAGGTCAAAGTGGAAGTCTTATAGTAATCAGGAGGTGTGGAAGCAGGTGCTGTTGTTTCGGGAGGCTGCGTTTTACAGAAGAGGTTCCGAGCCAAGCAATGAACAACGTAGTTGGCAGAATCAGAAGATGCACCCTTGCTTGTATGAAGATCAAGTTGGGACAAACTACAATCTCCGAGACAGGTTGAAATGTGACAAGAAGCTTTTATTTGGCAAATCTACATCATCTGGGCGAAGCTCTTCTGATTCATCTGTGGGAACTGAGAACAGGACCCCAAGTCCTCGTACTGAAGATCAATCTGAAAAACGGTTGCATGATTCCTCGGATGCAAATTTAGGTCTTGACAAATGTGCCACAGTACGCATCCCTTTGGGGGCAAATCATCAAGCTGAGATACCCGAATGGACTGGTGTAACTTCTGAAAGTGATTCTAAGTGGTTAGGGACACGAGTATGGCCACAGGAAAGAGTAAATACCAGACTTATTGAAAGGGACCCCATAGGAAAGGGGAGACAAGATTCATGTGGCTGCTCTGAACAAGGTTCTGTTGAGTGTGTAAGATTCCACATTTCTGAGAAAAGGGCTAAAGTTCAGCTGGAATTGGGTGCGGCATTTTATGACTGGAACTTTGATCAGGTAGGTGAAGGCGTTAGGCTAATGTGGACAAAAGAAGAAGAGAAAAAATTTGAGGATGTGGTACGATCAAACCCTCCATCGCCTGAGCATTATTTCTGGGACTATATCTTTAGGGCATTTCCTGATAAAAGCAGGGCAGATTTAGTTAGCTACTACTTCAATGTCTTTATGTTGCAGCGCAGAGGATATCAAAATAGGCATACTCCAGATAACATTGATAGTGATGACAATGACGAAGAAGCTGGACCGCTGAGGAATGTTTTTGGACATCAGATACAAAATTCTGGACATCAGGTGCAGAGTTCACGTGGCTCCATCTTATTAACCCCCAAAAAGCCACATAAAAAGGGAAAATAG 2025 0.4657 MSMAGRLLFDDGVREEDSGGIVGGSNDDSLCRFERLFPEFFSEICVFNCVLPYPPMLSDGQDVDLYRLFLVVRGKGGYDAVCNGKLWDSVGEESGMGVSVGSSVELVYSRYLSALDSWMKKVAESKVSPECGVVDNRDKFGRRLMELQAEVEGLFSGCAEDRVVVAGEDVEGGLDEDDHILDRRELCGANGVKGSGDEGGEHGECSDSETPDHDMNEAILGNSDKGNGAMGREEGFDRGKMTEEQAVDISDGANNSGAELLSGGKKCEDYDDKGVVLDASGGNSGDGDSSGHKRKREGSVLDSSSDDSDSPSRKRMRESAMDMLSWVTGVAKNPSEPEVGSIPERSKWKSYSNQEVWKQVLLFREAAFYRRGSEPSNEQRSWQNQKMHPCLYEDQVGTNYNLRDRLKCDKKLLFGKSTSSGRSSSDSSVGTENRTPSPRTEDQSEKRLHDSSDANLGLDKCATVRIPLGANHQAEIPEWTGVTSESDSKWLGTRVWPQERVNTRLIERDPIGKGRQDSCGCSEQGSVECVRFHISEKRAKVQLELGAAFYDWNFDQVGEGVRLMWTKEEEKKFEDVVRSNPPSPEHYFWDYIFRAFPDKSRADLVSYYFNVFMLQRRGYQNRHTPDNIDSDDNDEEAGPLRNVFGHQIQNSGHQVQSSRGSILLTPKKPHKKGK* 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00133 674 MobiDBLite consensus disorder prediction 277 317 - -
Lapu10g00133 674 SMART ELM2_2 466 516 IPR000949 -
Lapu10g00133 674 ProSiteProfiles ARID domain profile. 27 120 IPR001606 GO:0003677
Lapu10g00133 674 SMART ARID_2 31 116 - -
Lapu10g00133 674 MobiDBLite consensus disorder prediction 644 663 - -
Lapu10g00133 674 Pfam ARID/BRIGHT DNA binding domain 53 114 IPR001606 GO:0003677
Lapu10g00133 674 CDD ARID 32 116 - -
Lapu10g00133 674 MobiDBLite consensus disorder prediction 438 453 - -
Lapu10g00133 674 MobiDBLite consensus disorder prediction 416 437 - -
Lapu10g00133 674 Gene3D - 38 129 IPR036431 GO:0003677
Lapu10g00133 674 MobiDBLite consensus disorder prediction 197 214 - -
Lapu10g00133 674 SUPERFAMILY ARID-like 48 123 IPR036431 GO:0003677
Lapu10g00133 674 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 27 670 - -
Lapu10g00133 674 SMART bright_3 35 121 IPR001606 GO:0003677
Lapu10g00133 674 MobiDBLite consensus disorder prediction 621 674 - -
Lapu10g00133 674 MobiDBLite consensus disorder prediction 288 317 - -
Lapu10g00133 674 MobiDBLite consensus disorder prediction 416 453 - -
Lapu10g00133 674 CDD SANT 565 612 IPR001005 -
Lapu10g00133 674 MobiDBLite consensus disorder prediction 622 639 - -
Lapu10g00133 674 MobiDBLite consensus disorder prediction 190 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00133 Lapu-Chr10 3062256 3066222 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lapu10g00133 ARID 2.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00133 - - pvu:PHAVU_010G100300g 967.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01533 1 28121656 28126408 Lapu10g00133 10 3062256 3066222 PCT