Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00124 ATGGCTGTGGTGAGTCCTATGCCTGCAACTCCACCACCGGTCAATACTACGAACACGCTTCGTGATATTGGGGTTCCTGGAGTCATAACTAGTAGGGGAGAAATTGTAAGTGAGCCTAGTCCAAGTATGGTTAATGACACGATCTATGTTGCTGTGGCAAAAGATGTGAAAGACAGCAAATTAAATCTCATATGGGCAATACAAAATTCTGGAGGAAAGAGAATTTGCATCCTTCATGTTCACGTGCCAGCACCTATGATCCCTTTGATGGGTGCTAAATTTCCTTTAAGTGCACTGAGAGAGCAGGAAGTTCAAGATTATCATGAAAAGGAAAGGAAAAATATTCACAAGACTATGGAAGCCTATCTTTATATCTGTCAAAGAATGGGGGTGCAAGCAGGGAAACTACACATTGAAATGGATTGTGTAGAAAAAGGGATTGTAGAACTCATCCACCAGTATGGCATACAGAAGCTTGTAATGGGAGCAGCATCTGATAAGTACCATTCTAGGAGAATGATCTCCCTCAGATCTAAGAAAGCTATATATGTACGTGAACAAGCTCCAGCTTCTTGTCGTATACAGTTTATCTGCAACGGGTACCTCATACACACAAGGGATTGCAGACTGGATAAAGGGAATGTAGAGGTCGTATCTCCTTCTGTGCAGCAAATAGCAAACTCAGAAGTTGGACATTCACCTTACACGAGATCCCCATCTATAGTGCAAGGGCAAAATCAACAACAGTTATTTCGTAGAGTTAGGACTGCCAGTGATGGACATAGGAGAAGCATTGGATCTGTTTCTTCTTTAGAAGGGTACTTAACTCCTCAGAGAAAATTCGGTAAAGAATCAAGTTCTGATGAGTTAAATGGGCAGTCACGGCAAAGTTCTTCAATTTTCTCAATGCGCTTTGAGAGTAGTTCTGTTGATCCAGAATTGATCCCAGATTTTATTAACAATGGCAGTGAGAATGTATTAGAATCGACATTGAATAGCTTTTCTCTGAATAACAAGGATCTTCATCATTCACCATCTCCAAGTGTACTGGATGGAGGAGTGGATGATGCTCTCTATGGTCAACTTGAACAGGCAATGGCTGAGGCTGCGAATGCTAGGCATGCTGCATACCAAGAAACCCTTCGGCGTGTAAAAGCAGAAAGAGAAGCCATTGATGCTATACGCAAGGCTAAAGCCACTGAAAACTTGTATCAAGAAGAGCTAAAACTAAGAAAAGAACAAGAGGAAGAAGTACAGAAAGCAAATGAAGAACTTGATAATCTGAAGAGCCAGATAAACAAAGTTAATGAGGAACTCCAACTTGCCTTAGATCAGAAATTATCCCTAGAGAATCGAATTGCATCAACTGAACTTATTATAAAGGAGTTGGAGCAGAAGAATATATCTAGTGATGAGCTGTGTCAAAACTACAAGGATGAACTAGATGATTTGCAAATGCAGCTTCATAATGCATTGGAAGTGGCTGAGGAGTTAAGGAGAAAACAAGGGGAAGCCTCAAGCACGCACGGGCTTCAACGTTTCTCAGAATTCTCCTTTTCAGAGATTAAAGAAGCAACAAATAACTTCAATCCGTCCCTGAAGATTGGACAAGGTGGATATGGAAGTATCTTTAAAGGTATCTTACGTAACACTGAGGTGGCTATAAAAATGTTGAGTCCTAACAGCACCCAAGGTCCAGTGGAGTTCCAACAAGAGGTTGAAGTATTGAGCAAGTTAAGGCACCCCAATCTTGTGACACTTATAGGATCTTGCCCAGAATCCTGGACTCTTGTCTATGAGTATTTACCCAATGGAAGCCTTGAAGATCGTCTCAACTGCAAGGATAACACACCTCCATTATCATGGCAAACTCGAATCCGCGTTGCTGCAGAACTCTGCTCAGCTCTCATTTTTCTTCACTCAAGTAAACCACACAGCATAGTACATGGTGATTTAAAACCCGCCAACATTCTCCTTGATGCAAACCTTGTAAGCAAGCTCAGTGACTTCGGAATCTGTCGTATATTATCTTGTCAAGAGGGTTCAAGTAGCAGCACTACACAGTTTTGGAGAACTGTTCCAAAGGGAACTTTTGTGTATGTGGATCCTGAATTCCTCACTTCTGGTGAACTCACACCAAAGTCAGACGTTTATTCATTTGGAATCATTCTATTGAGATTGATCACTGGGAAACCTGCTCTGGGAATAACAAAGGAAGTGCAATATGCATTAGATGTTGGAAAGTTGAAATCCATCTTGGATCCTTTGGCTGGACAATGGCCATTTATGCTAGCTGAAGAGTTGGTTCGATTGGCTTTGAGGTGTTGTGAGATGAATAGAAAGAGCAGACCAGATCTTTACCTAGATGTTTGGAGAATACTGGAACCAATGAAGGCTTCTTGTGGAGGCACCAACACCTTTCAGTTGGGTTCTCAACAAAAATGCCAACCTCCTCCATATTTTATTTGTCCAATCTTTCTGGAAGTGATGCAAGATCCACACGTGGCTGCAGATGGTTTTACTTACGAAGCTGAGGCAGTACGTGAATGGCTGAAAAGTGGTCGTGACACTTCACCAAGGACAAAATCTAAGCTTGCACATCACAACCTAATTCCGAATCACTGTCTTCGCCATGCAATCCAGGACTGGCTTCAAACTCAATGA 2664 0.4182 MAVVSPMPATPPPVNTTNTLRDIGVPGVITSRGEIVSEPSPSMVNDTIYVAVAKDVKDSKLNLIWAIQNSGGKRICILHVHVPAPMIPLMGAKFPLSALREQEVQDYHEKERKNIHKTMEAYLYICQRMGVQAGKLHIEMDCVEKGIVELIHQYGIQKLVMGAASDKYHSRRMISLRSKKAIYVREQAPASCRIQFICNGYLIHTRDCRLDKGNVEVVSPSVQQIANSEVGHSPYTRSPSIVQGQNQQQLFRRVRTASDGHRRSIGSVSSLEGYLTPQRKFGKESSSDELNGQSRQSSSIFSMRFESSSVDPELIPDFINNGSENVLESTLNSFSLNNKDLHHSPSPSVLDGGVDDALYGQLEQAMAEAANARHAAYQETLRRVKAEREAIDAIRKAKATENLYQEELKLRKEQEEEVQKANEELDNLKSQINKVNEELQLALDQKLSLENRIASTELIIKELEQKNISSDELCQNYKDELDDLQMQLHNALEVAEELRRKQGEASSTHGLQRFSEFSFSEIKEATNNFNPSLKIGQGGYGSIFKGILRNTEVAIKMLSPNSTQGPVEFQQEVEVLSKLRHPNLVTLIGSCPESWTLVYEYLPNGSLEDRLNCKDNTPPLSWQTRIRVAAELCSALIFLHSSKPHSIVHGDLKPANILLDANLVSKLSDFGICRILSCQEGSSSSTTQFWRTVPKGTFVYVDPEFLTSGELTPKSDVYSFGIILLRLITGKPALGITKEVQYALDVGKLKSILDPLAGQWPFMLAEELVRLALRCCEMNRKSRPDLYLDVWRILEPMKASCGGTNTFQLGSQQKCQPPPYFICPIFLEVMQDPHVAADGFTYEAEAVREWLKSGRDTSPRTKSKLAHHNLIPNHCLRHAIQDWLQTQ* 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00124 887 Pfam U-box domain 818 886 IPR003613 GO:0004842|GO:0016567
Lapu10g00124 887 CDD RING-Ubox_WDSUB1-like 818 873 - -
Lapu10g00124 887 SUPERFAMILY RING/U-box 813 885 - -
Lapu10g00124 887 Gene3D Phosphorylase Kinase; domain 1 499 601 - -
Lapu10g00124 887 MobiDBLite consensus disorder prediction 276 298 - -
Lapu10g00124 887 ProSiteProfiles U-box domain profile. 816 887 IPR003613 GO:0004842|GO:0016567
Lapu10g00124 887 Pfam Protein kinase domain 533 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu10g00124 887 FunFam receptor-like protein kinase FERONIA 493 601 - -
Lapu10g00124 887 PANTHER OS02G0152300 PROTEIN 48 882 - -
Lapu10g00124 887 SUPERFAMILY Tropomyosin 362 505 - -
Lapu10g00124 887 SUPERFAMILY Protein kinase-like (PK-like) 507 786 IPR011009 -
Lapu10g00124 887 SMART Ubox_2 820 883 IPR003613 GO:0004842|GO:0016567
Lapu10g00124 887 Coils Coil 367 387 - -
Lapu10g00124 887 Coils Coil 396 501 - -
Lapu10g00124 887 SMART serkin_6 529 798 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu10g00124 887 Gene3D Transferase(Phosphotransferase) domain 1 602 806 - -
Lapu10g00124 887 CDD STK_N 47 200 - -
Lapu10g00124 887 ProSitePatterns Serine/Threonine protein kinases active-site signature. 647 659 IPR008271 GO:0004672|GO:0006468
Lapu10g00124 887 ProSitePatterns Protein kinases ATP-binding region signature. 535 556 IPR017441 GO:0005524
Lapu10g00124 887 ProSiteProfiles Protein kinase domain profile. 529 798 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu10g00124 887 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 60 171 - -
Lapu10g00124 887 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 816 887 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00124 Lapu-Chr10 2938032 2949364 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00124 1 885 U-box Gene Family AT2G45910 51.512 0.0 878
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Lapu10g00124 Pkinase 9.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00124 - - var:108321203 1415.98