Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00105 ATGGATCGAGGGGACCAAATGACATTACCTGGCTCTGCATCTTACTACATGCAGAGAGGAATACCTGGTGCTGGAACTCAACCTGACCTGCACAACTCGCCTAATATTCGACCATTGTCTAATCCTAATTTACCATTTCAATCAAGCATTGGTGGTGGTGGTACCATTGGATCTACATTACCATTGGAATCTTCAGGAATTTCATCTCCAGGTGTCAATGTGAGTGTTCCTTCTGGTGCTGTGCCAGGGGAATCTGTCAAAAGGAAGAGAGGAAGGCCTAGAAAATACGGGCCAGATGGTGCTGTGTCGTTGGCATTGACTCCAACACCAGCAAGTCATCCTGGAGCCATGTCACAAGGCCAGAAACGAGGTAGAGGGCGCCCACCAGGATCAGGGAAGAAACAGCAGTTGGCTTCTCTTGGTGAACTGATGTCTGGTTCAGCTGGGATGGGTTTCACTCCTCATATCATTACCATAGCAGTTGGAGAGGATGTTGCCACAAAAATCATGGCATTTTCTCAGCAGGGGCCAAGAGCTATATGTATTTTGTCAGCCAATGGTGCTGTGTCTACTGTGACACTTCGTCAGCCTTCAACATCTGGTGGCACTGTCACATATGAGGGGCGTTTTGAGATATTGTGTCTGTCAGGCTCTTACTTGGTTGCCGATAGTGGCGGTGCCCGCAATCGAACTGGTGGATTAAGTGTTTCCTTGGCAAGTCCTGATGGTCGTGTCATTGGTGGAGGAGTTGGCGGAGTGCTCATTGCTGCAAGTCCAGTTCAGGTGATAGTTGGAAGCTTTACATGGGGTGGATCAAAGACAAAGATCAAGAAAAAAGAACCTTCAGAAGGTGCAGAAATTGCTATAGAGACTGATCATCAGACAGTTCATAATCCAGTTGCAATGAATAGCCTCTCGCCGAATCAAAATCTTACTCCAACCTCGTCTCTAAGTCCGTGGCCAGCATCGCGACCATTGGATATGCGCAATTCTCATATTGACATTGATTTAATGCGCGGGTGA 1023 0.4751 MDRGDQMTLPGSASYYMQRGIPGAGTQPDLHNSPNIRPLSNPNLPFQSSIGGGGTIGSTLPLESSGISSPGVNVSVPSGAVPGESVKRKRGRPRKYGPDGAVSLALTPTPASHPGAMSQGQKRGRGRPPGSGKKQQLASLGELMSGSAGMGFTPHIITIAVGEDVATKIMAFSQQGPRAICILSANGAVSTVTLRQPSTSGGTVTYEGRFEILCLSGSYLVADSGGARNRTGGLSVSLASPDGRVIGGGVGGVLIAASPVQVIVGSFTWGGSKTKIKKKEPSEGAEIAIETDHQTVHNPVAMNSLSPNQNLTPTSSLSPWPASRPLDMRNSHIDIDLMRG* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00105 340 ProSiteProfiles PPC domain profile profile. 148 290 IPR005175 -
Lapu10g00105 340 SMART AT_hook_2 122 134 IPR017956 GO:0003677
Lapu10g00105 340 SMART AT_hook_2 87 99 IPR017956 GO:0003677
Lapu10g00105 340 Pfam Plants and Prokaryotes Conserved (PCC) domain 154 268 IPR005175 -
Lapu10g00105 340 CDD DUF296 153 267 IPR005175 -
Lapu10g00105 340 MobiDBLite consensus disorder prediction 302 325 - -
Lapu10g00105 340 MobiDBLite consensus disorder prediction 28 75 - -
Lapu10g00105 340 MobiDBLite consensus disorder prediction 302 321 - -
Lapu10g00105 340 Gene3D - 154 297 - -
Lapu10g00105 340 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 66 315 IPR039605 GO:0003680
Lapu10g00105 340 MobiDBLite consensus disorder prediction 1 137 - -
Lapu10g00105 340 SUPERFAMILY AF0104/ALDC/Ptd012-like 152 269 - -
Lapu10g00105 340 FunFam AT-hook motif nuclear-localized protein 1-like 154 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00105 Lapu-Chr10 2663403 2671635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00105 1 340 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 51.111 1.23e-88 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00105 - - gmx:100799791 590.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00105 10 2663403 2671635 Lapu10g00105 10 2663403 2671635 ECH