Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00092 ATGTCATTCACTGGAACTCTTGACAAATGCAAGGCATGTGACAAGACTGTCTATGTGGTTGACTTGTTAACTCTTGAAGGCATTCCTTACCATAAGAACTGCTTCAAATGCAGTCACTGCAAGGGATATCTTACGATGTGCACTTACTCCTCAATGGATGGAGTTCTCTATTGCAAGACACATTTTGAACAACTCTTCAAGGAATCTGGCAATTTCAGCAAGAACTTCGCAAAGTCTACTGAGAAACAAAACGAGATACAGAATAGAACCCCCAGCAAACTATCTTCCATGTTCAGTGGAACCCTGGACAAATGTGCAGTTTGCACAAAAACAGTCTATCCTCTGGAAAAGGTGACACTGGAAGGTGAATGCTACCACAAGACTTGCTTTAGGTGTGCTCATGCAGGGTGCCCTCTAACACATTCAAACTATGCCTCCCTTGATGGTGTCCTCTACTGCAGAGTCCACTTTGCACAACTGTTCATGGAGAAAGGGAACTACAGCCATGTGCTCCAAGCTGCTGCACACAAGAGGACAGGTTCCTCTACACCTCCTGAGCCTCTATTTGAGGAGCCATCACATCCAGCACCAGCATCTGAGGAACCTTCAGTAGTAGAAGATGAAGAAAAAGGAGAAGAAGAAGAAAGCTCTTGA 654 0.4465 MSFTGTLDKCKACDKTVYVVDLLTLEGIPYHKNCFKCSHCKGYLTMCTYSSMDGVLYCKTHFEQLFKESGNFSKNFAKSTEKQNEIQNRTPSKLSSMFSGTLDKCAVCTKTVYPLEKVTLEGECYHKTCFRCAHAGCPLTHSNYASLDGVLYCRVHFAQLFMEKGNYSHVLQAAAHKRTGSSTPPEPLFEEPSHPAPASEEPSVVEDEEKGEEEESS* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00092 217 ProSiteProfiles LIM domain profile. 103 163 IPR001781 -
Lapu10g00092 217 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Lapu10g00092 217 Gene3D Cysteine Rich Protein 5 101 - -
Lapu10g00092 217 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Lapu10g00092 217 SMART lim_4 104 156 IPR001781 -
Lapu10g00092 217 SMART lim_4 9 61 IPR001781 -
Lapu10g00092 217 FunFam LIM domain and actin-binding 1 99 169 - -
Lapu10g00092 217 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Lapu10g00092 217 MobiDBLite consensus disorder prediction 176 217 - -
Lapu10g00092 217 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Lapu10g00092 217 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 97 130 - -
Lapu10g00092 217 Gene3D Cysteine Rich Protein 102 169 - -
Lapu10g00092 217 FunFam LIM domain and actin-binding 1 4 74 - -
Lapu10g00092 217 PANTHER OS06G0237300 PROTEIN 6 83 - -
Lapu10g00092 217 Pfam LIM domain 10 65 IPR001781 -
Lapu10g00092 217 Pfam LIM domain 105 160 IPR001781 -
Lapu10g00092 217 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 131 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00092 Lapu-Chr10 2523374 2525473 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Lapu10g00092 LIM 5.5e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00092 - K09377 gmx:100305845 372.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00092 10 2523374 2525473 Lapu10g00092 10 2523374 2525473 ECH
Lapu1g01571 1 28529573 28531509 Lapu10g00092 10 2523374 2525473 PCT