Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00083 ATGGAAGCAGCAACAGCAGCAACCTCTTCTCAGAAAAAGCTGAAGCGGAAGCGAACCCAGGCAAAAAGCAATCCTGAACTCGACCGTCTCAACTCGCTTCCGTGGAACTCCTCTCTTCCTCAAAACGACGACGATGACGCTTTCTCAATGTTCATTGGCTCCAACGAACTCGAAGGAGGTTTTCTTTCGCTCGAGGAGATTGATGAGGCGGAGTATGGTTTGAATATTCCTGAACCTGAATATGGCAAGAGGAAGACTAAGAAGAATAAGTCTATACAGAAGGAAGATGTGAAGAAGCAGCAACAAGATGGAGTTGTTTGTGCTAGTAGTGACGAGGTCGAAGCTGAGTTGGACGAGAGTGTTAAAGAGAAGAAAAAGAAGAAGAAGAAGAAGAAAACGAAAAAGAAGGATGCTACGGAAGAACAGAAAGTTGAGCAGCCAGATGCTGGTTTAGATGCTAATGTGAAAGATGATAACAATGAAGAGGACGATGATGAAACTGAATTTTATGCATGGAATGAGTTGAGGCTTCATCCTCTCCTAATGAAAGCAATATGCAAGCTGGGCTTCAAGGAACCTACACCAATACAGAAGGCTTGCATACCAGCTGCTGCTCATCAAGGGAAGGTTGATGTTGTTGGGGCTGCAGAGACAGGATCTGGTAAAACACTGGCATTTGGTTTGCCCATTTTGCAACGCCTTTTGGAGGAGAGAGATAAGGATGCAAACATGGTTGAAGAACCTGAAAAATATTCTCCTAAAGGCCTTCTGAGGGCTCTTATTATTGCTCCAACTAGAGAACTTGCACTTCAGGTCGCTGATCATCTGAAAGCAGTTGCGAAGCATATTAATGTTAGGGTGACCCCTGTAGTTGGGGGAATTTTAGCAGAAAAACAGGAGAGACTTTTAAAAGCAAAGCCTGAGATTGTTGTTGGGACTCCAGGAAGGTTATGGGAACTTATGTCAGCTGGGGAAAAACATCTAGTTGAGTTACATTCACTCTCTTTCTTTGTGCTTGATGAGGCTGATCGGATGGTACAAAGTGGTCATTTTAAGGAGTTGCAATCTATAATTGATATGCTTCCCATGTCCAATATCTCCACTGAAGATAATTCTCAAAATGTACAAAAAAGTTGTGTTACAGTTTCTAGTTACCAAAGAAAGAAAAGGCAAACACTTGTTTTTTCAGCAACTGTTGCACTGTCTGCTGATTTTCGCAAGAAACTAAAGCGTGGCTCAATTCAACAAAAACAATCATCGACAGTTGGATTGAATTCTATCGAAACTCTTTCTGAGCGTGCAGGAATGAGATCCAATGCTGCAATTATTGATCTTACTAATCCGTCTATTTTAGCAGCTAAGCTTGAGGAGTCATTTATTGAATGCAGAGAAGAAGATAAAGATGCATATTTGTATTATATTTTGACTGTCCATGGACAAGGTCGCACAATAGTTTTCTGCACATCAATTGCAGCTTTAAGGCATATTTCTTCCATACTGCGCATTCTTGGAATCAATGTTTGGACTCTTCATGCCCAAATGCAGCAGCGTGCACGATTGAAGGCCATTGATCGCTTTCGTGAAAATGAAAATGGCATACTTGTTGCTACAGATGTTGCTGCAAGGGGTCTCGATATTCCTGGTGTTAGAACTGTTGTCCACTATCAGCTTCCGCATTCAGCAGAGGTTTATGTTCATAGAAGTGGAAGAACAGCCAGAGCTTCTGCCGAAGGTTGTAGTATTGCTTTAATATCATCGAGAGATACGTCAAAGTTTGCTTCACTGTGCAAATCATTCTCTAAGGATAACTTTCAGCGGTTTCCTTTAGAGAACTCTTACATGCCAGAGGTCCTAAAAAGATTGTCTCTTGCACGGCAAATAGACAAGATAACAAGGAAGGATTCCCAGGTAAAGGCTGAGAAAAGCTGGTTTGATCGGAATGCTAGCTCAGTGGAATTAGTTACTGAAAATTATGACAGTGAAGAGGAACAAGTGAACAAACATAAGCAAACGAAGGCCAGCTCTAGACAATTGAAGAAATTGCAGGAGGAGCTCAATATGTTGATTTCACGCCCATTGCAATCAAAATCATTTTCACACCGGTATTTAGCAGGGGCTGGTGTTACACCCCTCATGCAGGAGCAATTGCAACAATTAGCAAGGCAAAAACTTAGTGATCACCAGGGTTCTACTCTAGGCAAAAAGGGAAAATTGGTTGTGATAGGTCAAGATTGCATGGATGCACTTCAGGCACTTCGAAGTGCTGGTGAAGAGGTGCGAATGGATATCAAGGATTTGGCTGGAAAACAGAGAAATGTGGAGAATTTAAAAAGAAAGCGAAAAGAGGAGAAAAAACGTTTGCGTGATCAACGTAGAAAGCAGAAGAAAAAGCTAAAATACGGGGATGAATAG 2412 0.4179 MEAATAATSSQKKLKRKRTQAKSNPELDRLNSLPWNSSLPQNDDDDAFSMFIGSNELEGGFLSLEEIDEAEYGLNIPEPEYGKRKTKKNKSIQKEDVKKQQQDGVVCASSDEVEAELDESVKEKKKKKKKKKTKKKDATEEQKVEQPDAGLDANVKDDNNEEDDDETEFYAWNELRLHPLLMKAICKLGFKEPTPIQKACIPAAAHQGKVDVVGAAETGSGKTLAFGLPILQRLLEERDKDANMVEEPEKYSPKGLLRALIIAPTRELALQVADHLKAVAKHINVRVTPVVGGILAEKQERLLKAKPEIVVGTPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVQSGHFKELQSIIDMLPMSNISTEDNSQNVQKSCVTVSSYQRKKRQTLVFSATVALSADFRKKLKRGSIQQKQSSTVGLNSIETLSERAGMRSNAAIIDLTNPSILAAKLEESFIECREEDKDAYLYYILTVHGQGRTIVFCTSIAALRHISSILRILGINVWTLHAQMQQRARLKAIDRFRENENGILVATDVAARGLDIPGVRTVVHYQLPHSAEVYVHRSGRTARASAEGCSIALISSRDTSKFASLCKSFSKDNFQRFPLENSYMPEVLKRLSLARQIDKITRKDSQVKAEKSWFDRNASSVELVTENYDSEEEQVNKHKQTKASSRQLKKLQEELNMLISRPLQSKSFSHRYLAGAGVTPLMQEQLQQLARQKLSDHQGSTLGKKGKLVVIGQDCMDALQALRSAGEEVRMDIKDLAGKQRNVENLKRKRKEEKKRLRDQRRKQKKKLKYGDE* 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00083 803 MobiDBLite consensus disorder prediction 25 44 - -
Lapu10g00083 803 MobiDBLite consensus disorder prediction 781 795 - -
Lapu10g00083 803 PANTHER RNA HELICASE 129 743 - -
Lapu10g00083 803 Gene3D - 452 694 IPR027417 -
Lapu10g00083 803 Pfam DEAD/DEAH box helicase 194 400 IPR011545 GO:0003676|GO:0005524
Lapu10g00083 803 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 454 615 IPR001650 -
Lapu10g00083 803 SMART ultradead3 189 417 IPR014001 -
Lapu10g00083 803 Coils Coil 766 797 - -
Lapu10g00083 803 MobiDBLite consensus disorder prediction 72 165 - -
Lapu10g00083 803 MobiDBLite consensus disorder prediction 78 101 - -
Lapu10g00083 803 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 116 362 IPR027417 -
Lapu10g00083 803 Coils Coil 110 142 - -
Lapu10g00083 803 MobiDBLite consensus disorder prediction 770 803 - -
Lapu10g00083 803 SMART helicmild6 494 575 IPR001650 -
Lapu10g00083 803 Coils Coil 651 691 - -
Lapu10g00083 803 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 203 417 IPR014001 -
Lapu10g00083 803 MobiDBLite consensus disorder prediction 135 156 - -
Lapu10g00083 803 CDD SF2_C_DEAD 455 584 - -
Lapu10g00083 803 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 258 590 IPR027417 -
Lapu10g00083 803 MobiDBLite consensus disorder prediction 1 51 - -
Lapu10g00083 803 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 338 346 IPR000629 -
Lapu10g00083 803 CDD DEADc_DDX24 181 444 - -
Lapu10g00083 803 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 170 198 IPR014014 GO:0003724
Lapu10g00083 803 Pfam Helicase conserved C-terminal domain 466 574 IPR001650 -
Lapu10g00083 803 Gene3D - 118 418 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00083 Lapu-Chr10 2392595 2404115 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00083 171 615 Eukaryotic Initiation Factors Gene Family AT5G11200 28.358 9.84e-41 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00083 K14805 - gmx:100806018 1336.24