Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00080 ATGGCTTTTCCCCCTTACCGACGATCCCACTTACGTAGCAACACTTACCATGCCCTTGTTCACCTCCTCTCTCACCTTGCTGAGTACAACGCTTCACATCAAACTCCAACTCAACCCCTCAACATTCCTGATAATGACAGTGGTAGAATGGATGGAGTAAACCAAGAAAAGGAGCCCAAGTGCTCCGAAGTTGTTGATTCTGATTTTTTGGATCCTAAAGATCCTATAAGCCAGAAGGATATACCGGAGGTTCAGGAGATCATTGAGGGAGTTGGAGACAAGGATATGGATTTTACTTCCAATAAGATGATCCTAGAGGATATAGAGCATATGATGGGAATAGAGGACATGTCTACCCAAGTAAATGGTTCTGATAAGGAGCAGGAGCTAATAAATGAGTTTGAACTGGTTATGAAAGGAACTGAAGATCTTATTTGTGATAGTGGTTTAATCCCCTTGAACACGGGATTTGATGAGAAACATAATGATGGCTGTGAAGTTGGGTTGATGGATTCTCAAGTAGACATGGAAGAGGGAGAAATTTCTGGAGACCTGGGAAAGAATGGCAATTCATTTGATGTATCTTCTGCAGATGCTTTAATTTTACGGCAGATTCAAGTAGATGATGTTCAGAAGCCTGTAAATGTAATTAGAAATATGATACATCCTTCTATGATTAAGAATCAAGAAAAGGAAAAAGGCTGTGATTCTACTTCCTCTATGGTAAATTCACTTCAAGAGGCCAATGATAGTGGACAGGTGGAGCCTATAACGGGTGGCAACAAAGGAATTGCATGCAGAGTTGAAGTAGCAATTTCTGAAGAAACTGAATGTAAGAAGGAAGATAAAGCGAAGTTGTTGAATGCCAGTAAAAGGAAAAATCGTGGTGGAAATAAAGAGAAAAAGAAGATGGTGTCTAGAATGAAGAGAGCAAAAAAGAACAGAGAACTAGGTGTTAAAAGTTTGCAGTTGCAGAAGTATATACAGAAACCGAAAGTTGTGTCACATTGTCGCCATTATCTTGCCGGAAGGTGCCATGAGGGTGACAAGTGTAATTTTTCACATGATGTAGTGCCTCGAACAAAATCCAAGCCATGCAGTTACCTTGCTCTTCATTCTTGCATGAAAGGGGATGATTGCCCATTTGATCACCAGCTCTCAAAATATCCTTGCAACAATATTGTATCCCAAGGCTTTTGTAGAAGAGGTGAAACTTGCCTCTTTTCACACCAGGTACCATCCAAAGAAGACATCCCTACCCCTTCAAATGTGTGCCGACCAGTGTTGTCTACTCTTCAGTCAGGAAATGCAAAGTCCAGTACACCGCCTAGCAATAATCATGGCTCTGGTTCTGTCCCTCAAAACCTCTTAACTCATTCTTCAGGAATTCATTCTCGCATCAATGTTGAACATAAGGTGACAAACACTGCACAAAAACAGCCTACACCACCTAAAGGAATTAGTTTCATCAATCCTGCAAAATTAACACCCTGCCCTTCTACACTAAAACAAGGCACAGTAACAATCAAGGAAAGTCCTTTACAAACGGGGATCCACGAAGATCAAAGTGCATTTGACAAAACTCAAAACAAGATGGAGATTGCTAATAAATTGCCATCTGTGACACCTAAGGGAGTAAACTTTCTTTCTTTTGGCAAAGGCTCTGTCTGTGGCTTTAAAAGTCATATTCGTCCAAAAGTGAGTATAGAAAATGGTTTCAAGTTGCCTCAATTACTCAATTTTGGCTTGACTGAGCAGGCTAATTCTTCTCTAAATAAGGATGACTACAACAAAGCTAGTGACAGAACAAAACAAAGTGTATCACTGAGTGATATATTCTTAAATGAGATTTTAGGGAAAAATCAATCTGTGTCAGAAGGAATGAAATCAAAGTTTCCAGATAAAGCCTCAGCTACACCAAGTCCTTTGGTTTCAATCCAGTCTTCTGAACACCTAAAATCTGGTTATCATAAGCATGCATCAAACTCAGGTCAAAAGGCACTATTGTCAACTTTAGCATTTGCAGCAGAGCATGATTCTGACATTAAGATGAAATGCCCATCCGGTGAGTCGTCAGCATGA 2082 0.4015 MAFPPYRRSHLRSNTYHALVHLLSHLAEYNASHQTPTQPLNIPDNDSGRMDGVNQEKEPKCSEVVDSDFLDPKDPISQKDIPEVQEIIEGVGDKDMDFTSNKMILEDIEHMMGIEDMSTQVNGSDKEQELINEFELVMKGTEDLICDSGLIPLNTGFDEKHNDGCEVGLMDSQVDMEEGEISGDLGKNGNSFDVSSADALILRQIQVDDVQKPVNVIRNMIHPSMIKNQEKEKGCDSTSSMVNSLQEANDSGQVEPITGGNKGIACRVEVAISEETECKKEDKAKLLNASKRKNRGGNKEKKKMVSRMKRAKKNRELGVKSLQLQKYIQKPKVVSHCRHYLAGRCHEGDKCNFSHDVVPRTKSKPCSYLALHSCMKGDDCPFDHQLSKYPCNNIVSQGFCRRGETCLFSHQVPSKEDIPTPSNVCRPVLSTLQSGNAKSSTPPSNNHGSGSVPQNLLTHSSGIHSRINVEHKVTNTAQKQPTPPKGISFINPAKLTPCPSTLKQGTVTIKESPLQTGIHEDQSAFDKTQNKMEIANKLPSVTPKGVNFLSFGKGSVCGFKSHIRPKVSIENGFKLPQLLNFGLTEQANSSLNKDDYNKASDRTKQSVSLSDIFLNEILGKNQSVSEGMKSKFPDKASATPSPLVSIQSSEHLKSGYHKHASNSGQKALLSTLAFAAEHDSDIKMKCPSGESSA* 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00080 693 MobiDBLite consensus disorder prediction 34 57 - -
Lapu10g00080 693 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 163 691 IPR045124 GO:0003723|GO:0045892
Lapu10g00080 693 Gene3D - 323 388 - -
Lapu10g00080 693 ProSiteProfiles Zinc finger C3H1-type profile. 331 358 IPR000571 GO:0046872
Lapu10g00080 693 ProSiteProfiles Zinc finger C3H1-type profile. 385 413 IPR000571 GO:0046872
Lapu10g00080 693 MobiDBLite consensus disorder prediction 293 310 - -
Lapu10g00080 693 MobiDBLite consensus disorder prediction 433 458 - -
Lapu10g00080 693 SUPERFAMILY CCCH zinc finger 332 356 IPR036855 GO:0046872
Lapu10g00080 693 SMART c3hfinal6 360 386 IPR000571 GO:0046872
Lapu10g00080 693 SMART c3hfinal6 330 357 IPR000571 GO:0046872
Lapu10g00080 693 SMART c3hfinal6 388 412 IPR000571 GO:0046872
Lapu10g00080 693 ProSiteProfiles Zinc finger C3H1-type profile. 360 384 IPR000571 GO:0046872
Lapu10g00080 693 Pfam CCCH-type zinc finger 336 356 IPR041367 -
Lapu10g00080 693 MobiDBLite consensus disorder prediction 293 312 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lapu10g00080 zf-CCCH_4 4.6e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00080 - - vun:114165961 1097.03