Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00078 ATGCCTCGTGGAACGCTTGAAGTTATCTTGATCAGCGCCAAAGGCCTCGATGACAATGATTTTCTCTCCAGCATAGATCCTTATGTGATTCTCACATACAGGGCACAGGAGCACAAGAGCACTGTGCAAGAAGATGCTGGATCCAAACCTCAATGGAATGAGAGCTTTCTTTTCACTGTTTCTGACAGTGCTTCTGAACTTAATCTAAAGATCATGGATAAAGACAACTTTACTCAAGATGATTGTCTTGGCGAGGCAACCATTGATTTAGGTCCTCTGTTTGAAGCGGGTAGCCTTCCAGAAACTGCTCACAAGGTGGTGAAGGACCAAGAATATTGTGGAGAGATTAAGGTGGCTCTCACTTTCACTGCTGAGAGAAACCAGGAACAGGAATACACAGTTGTAGAGGATGAAAACTATGGTGGATGGAAAGAATCAAGTGGGGAATTTTGA 453 0.4371 MPRGTLEVILISAKGLDDNDFLSSIDPYVILTYRAQEHKSTVQEDAGSKPQWNESFLFTVSDSASELNLKIMDKDNFTQDDCLGEATIDLGPLFEAGSLPETAHKVVKDQEYCGEIKVALTFTAERNQEQEYTVVEDENYGGWKESSGEF* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00078 150 SMART C2_3c 5 102 IPR000008 -
Lapu10g00078 150 Pfam C2 domain 4 95 IPR000008 -
Lapu10g00078 150 Gene3D C2 domain 2 124 IPR035892 -
Lapu10g00078 150 PANTHER C2 DOMAIN-CONTAINING 1 140 - -
Lapu10g00078 150 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1 124 IPR035892 -
Lapu10g00078 150 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00078 Lapu-Chr10 2345917 2348161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00078 4 135 C2H2 Transcription Factor Family AT4G21160 30.303 4.49e-14 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00078 - - gmx:100500006 268.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00078 10 2345917 2348161 Lapu10g00078 10 2345917 2348161 ECH