Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00070 ATGCCCTTTGGTGCAATATCTCAGCCACGCCTTGTGCCCACCACTCCCTCCTTGGCCAAATCCATGTTCAACTCCCCAGGACTATCTCTGGCACTTCAAACCAATATAGATGGACAAGAAGATGTGAATAGAATGGTCGAGAATAGCTTCGAACCAAACGGTTTGAGAAGAAGCAGAGAAGAAGAACATGAAAGCAGATCTGGCAGCGACAACATCGACGGCGCTTCCGGCGATGAACACGACGCGGCCGACAACCCTCCTAGGAAAAAACGCTATCACCGACACACCCCTCAACAGATACAAGAACTCGAAGCGCTGTTCAAGGAGTGTCCTCATCCAGATGAGAAGCAAAGACTCGAACTTAGCAAGAGGCTGTGCTTGGAAACTCGACAGGTGAAGTTTTGGTTCCAAAACCGGAGAACCCAAATGAAGACCCAGTTGGAGCGGCACGAGAACACTTTGCTGAGGCAAGAGAACGACAAGCTGAGAGCGGAGAACATGTCCATAAGGGACGCAATGAGGAACCCCATGTGCTCCAATTGCGGTGGCCCTGCCATCATCGGCGAGATTTCGCTGGAGGAGCAACACCTTCGGATTGAGAACGCGCGGTTGAAGGACGAGCTCGATCGCGTGTGTGCACTCACGGGCAAGTTTCTGGGTCGCCCCGTTTCTTCGTTACCGAATTCAAGTTTGGAGCTTGGCGTTGGGGGGAACGGGTTTGGTGGAATCAGCGGTAGCACTACATTGCCTTTGGGACAAGATTTTGGAATGGGAATGTCTATGTCTGTGTCTAACAACCCTTTGGCTTTGGTGTCTCCCTCGAGTACTAGACCAACAACTGTTGTGGGTGGGTTTGATAGGTCCATCGAGAGGTCTATGTTTCTTGAGCTTGCTTTGACTGCCATGGATGAGTTGGTGAAGATGGCTCAAACTGGGGAGCCTCTTTGGGTAAGGAATGTTGAAGGTGGGAGGGAAATTTTGAACCATGAGGAGTACGTGAGGACTTTCACACCTTGCATTGGTTTGAGACCCAATGGGTTTGTGTCTGAAGCCTCTAGGGAAAATGGGATGGTCATCATTAACAGTTTGGCACTTGTTGAGACTCTCATGGACGCGAATCGATGGGCAGAGATGTTTCCTTGTATCATTGCAAGAACCTCCACTACTGAAGTGGTATCTAATGGAATAAATGGAACAAGAAATGGAGCACTTCAATTGATGCATGCTGAACTTCAAGTTCTTTCGCCTTTGGTTCCTGTTCGTGAGGTCAATTTCCTAAGGTTTTGCAAGCAGCACGCAGAAGGGGTTTGGGCAGTGGTGGATGTGTCCATAGACAGCATCCGAGAAAGTTCAGGAGCACCACCAACTTTTGTGAATTGTAGGAGGCTTCCTTCTGGTTGTGTTGTGCAAGACATGCCCAATGGTTACTCCAAGGTGACATGGGTGGAGCATGCAGAATACGATGAGAGCCAAGTTCACCAGGTTTATAGACCATTGCTGAGCTCAGGCATGGGATTTGGTGCTCAACGCTGGGTGGCTACTCTTCAACGCCAATGCGAGTGTCTTGCTATCTTAATGTCCTCAGCAGCACCATCTCGAGACCATTCAGCAATAACAGCGGGGGGAAGGCGGAGCATGGTGAAGCTGGCACAGCGAATGACAAACAACTTCTGCGCCGGGGTTTGTGCCTCCACGGTGCACAAGTGGAACAAGCTCAACCCCGGGAACGTGGATGAGGACGTGAGGGTGATGACGCGGAAGAGCGTGGATGATCCCGGTGAGCCGCCAGGGATTGTGCTTAGCGCCGCCACCTCTGTGTGGCTCCCCGTGTCGCCGCAGAGGCTGTTCGACTTTCTCCGTGACGAGCGCCTGCGAAGTGAGTGGGACATACTCTCCAACGGTGGGCCCATGCAGGAGATGGCCCACATTGCCAAGGGCCAAGATCATGGCAACTGCGTCTCTCTCCTGCGAGCCAGTGCGATAAACTCCAACCAGAGTAGCATGCTGATACTACAGGAGACGTGCATAGACGAGGCGGGGTCCCTTGTGGTGTACGCGCCGGTGGATATCCCTGCCATGCACGTGGTTATGAACGGTGGTGATTCGGCTTATGTGGCACTTTTGCCCTCGGGGTTTGCTATTGTCCCAGATGGGCCTGGTTCTCGTGGGCCACAGAACGAGCCTACTACAGTAACAAACGGTGGTGATAATGGTGGAGTGCGTGTGAGTGGGTCCCTCTTAACGGTGGCGTTTCAGATCCTTGTGAATAGTCTCCCTACAGCGAAGCTCACCGTAGAGTCTGTGGAAACCGTGAACAACCTCATATCATGCACGGTTCAGAAGATCAAAGCTGCCCTGCACTGCGAAAGTTAA 2373 0.5196 MPFGAISQPRLVPTTPSLAKSMFNSPGLSLALQTNIDGQEDVNRMVENSFEPNGLRRSREEEHESRSGSDNIDGASGDEHDAADNPPRKKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSIRDAMRNPMCSNCGGPAIIGEISLEEQHLRIENARLKDELDRVCALTGKFLGRPVSSLPNSSLELGVGGNGFGGISGSTTLPLGQDFGMGMSMSVSNNPLALVSPSSTRPTTVVGGFDRSIERSMFLELALTAMDELVKMAQTGEPLWVRNVEGGREILNHEEYVRTFTPCIGLRPNGFVSEASRENGMVIINSLALVETLMDANRWAEMFPCIIARTSTTEVVSNGINGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDSIRESSGAPPTFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQVYRPLLSSGMGFGAQRWVATLQRQCECLAILMSSAAPSRDHSAITAGGRRSMVKLAQRMTNNFCAGVCASTVHKWNKLNPGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINSNQSSMLILQETCIDEAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPGSRGPQNEPTTVTNGGDNGGVRVSGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALHCES* 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00070 790 SMART HOX_1 87 150 IPR001356 GO:0003677
Lapu10g00070 790 FunFam Homeobox-leucine zipper protein HDG1 76 162 - -
Lapu10g00070 790 SUPERFAMILY Bet v1-like 289 521 - -
Lapu10g00070 790 ProSitePatterns 'Homeobox' domain signature. 121 144 IPR017970 GO:0000981|GO:0006355
Lapu10g00070 790 CDD homeodomain 88 146 IPR001356 GO:0003677
Lapu10g00070 790 Pfam START domain 296 521 IPR002913 GO:0008289
Lapu10g00070 790 Coils Coil 140 172 - -
Lapu10g00070 790 CDD START_ArGLABRA2_like 291 520 - -
Lapu10g00070 790 SMART START_1 296 521 IPR002913 GO:0008289
Lapu10g00070 790 ProSiteProfiles 'Homeobox' domain profile. 86 146 IPR001356 GO:0003677
Lapu10g00070 790 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 85 787 IPR042160 -
Lapu10g00070 790 FunFam Homeobox-leucine zipper protein GLABRA 2 296 520 - -
Lapu10g00070 790 Gene3D - 75 162 - -
Lapu10g00070 790 MobiDBLite consensus disorder prediction 49 96 - -
Lapu10g00070 790 MobiDBLite consensus disorder prediction 717 737 - -
Lapu10g00070 790 ProSiteProfiles START domain profile. 287 524 IPR002913 GO:0008289
Lapu10g00070 790 MobiDBLite consensus disorder prediction 723 737 - -
Lapu10g00070 790 SUPERFAMILY Homeodomain-like 74 146 IPR009057 -
Lapu10g00070 790 MobiDBLite consensus disorder prediction 53 88 - -
Lapu10g00070 790 SUPERFAMILY Bet v1-like 548 783 - -
Lapu10g00070 790 Gene3D - 365 518 IPR023393 -
Lapu10g00070 790 Pfam Homeodomain 89 144 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00070 Lapu-Chr10 2206055 2212849 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00070 23 790 Homeobox Transcription Factor Family AT3G61150 68.286 0.0 1035
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lapu10g00070 START 3.1e-57 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00070 K09338 - gmx:100811873 1449.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01618 1 29002674 29009766 Lapu10g00070 10 2206055 2212849 PCT