Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00059 ATGGTGGAAGCTAGTAAAGATGCAGTAGCAGTTGATGCCTGTTCAAGAGAAGACTGGTTGTTGCATGCACAGGAACTTGTTCCTGTGGCTCTAGCTAAGGCAAGAGAGGTTAAGGGGTTCCCTGGTAGGTGGAAGATGATAATTTCAAAATTGGAGCAGATTCCATCCTGTTTATCGGATTTGTCTAGCCACCCTTGTTTCTCCAAGAATGCTCTTTGCAAGGAGCAATTGCAGGCTGTGTCAAAGACACTTAAAGAAGCCACGGAATTGGCTGAGTTGTGTGTGAAGGAGAAGTATGAGGGTAAGCTTCGGATGCAGAGTGATCTTGATGCATTAACTGGGAAACTGGATTTGAATTTGAAGGATTGTGGTCTCTTGATCAAGACCGGTGTGCTTGGTGAAGCTACTTTGCCATTAACAGTGTTAGGTTCTATGGCAGAATCAGATATTGCAGCACACAACAATATAAGAGAACTACTAGCGCGCCTTCAGATTGGTCACTTGGAAGCAAAGCACAAAGCCTTAGACAACCTCTATGATGTTATGAAAGAGGATGAGAAGAATGTTTTGGCTGTTCTTGGCAGGAGGAATGTTGCTGCTTTGGTTCAATTGCTCACAGCAACATCTCCTAGGATAAGGGAGAAGACGGTTACTGTTATATGCTCTCTTGTGGAATCCGGGAGCTGTGAGAAGTGGCTAGTTTCTGAAGGAGTTCTGCCACCTCTTATTAGGCTTGTTGAATCTGGAAGCGCTGTCAGTAAAGAGAAGGCAATAGTATCTCTTCAGAGATTGTCAATGTCAGCAGAAACAACTCGTGCAATTGTTGGACATGGTGGTGTTCGGCCATTGATTGAGCTATGTCAAAGTGGTGATTCTGTGTCACAGGCTGCTGCTGCCTGTACTCTGACAAATGTATCAGCTGTTCCTGAGGTGAGACAGGCTTTGGCTGAAGAAGGTATTGTAAGCGTTATGATCAATCTTCTTAATTGTGGAATTTTATTAGGTTCCAAAGAGTACGCGGCTGAGTGTTTGCAGAATCTCACTTCAAGCAATGAGCAATTGAGAAAGTCTGTTATATCAGAAGGTGGTGTTAGAAGTCTTCTGACCTATCTTGATGGTCCACTTCCCCAAGAATCTGCAGTTGGAGCATTGAGGAATCTGGTTGGATCAGTTTCTGAGGAAACTTTGGTTTCTCTTAGTTTGCTTCCCCGATTGGTTCACGTTCTGAAGTCTGGATCTTTGGGTGCTCAACAAGCTGCCGCTTCTGTCATTTGCCGAGTTTGCAGCTCAATGGAGATGAAGAAAATGGTTGGTGAAGCTGGCTGCATCCCTCTTCTTATAAAGATGCTTGAGGCTAAAGCAAATACTGCTAGAGAGGTAGCTGCTCAAGCAATTTCAAGCCTAATGGTTCTGTCCCAGAATCGGAGAGAGGTTAAGAAAGATGATAAAAGTGTGCCAAATCTTGTACAGTTGCTTGATCCAAGCACTCAGAACACTGCCAAAAAGTATGCAATTTCATGCCTTGGATCACTTTCCCCATGTAAGAAGTGTAAAAAACTAATGATTTCGTATGGAGCAATCGGGTATCTGAAGAAGCTTACAGAGATGGACATTCCAGGAGCTAAAAAGCTACTTGAGAGGTTGGAAAGAGGGAAATTGAGAAGCTTGTTCAGCAGAAAGTAG 1683 0.4373 MVEASKDAVAVDACSREDWLLHAQELVPVALAKAREVKGFPGRWKMIISKLEQIPSCLSDLSSHPCFSKNALCKEQLQAVSKTLKEATELAELCVKEKYEGKLRMQSDLDALTGKLDLNLKDCGLLIKTGVLGEATLPLTVLGSMAESDIAAHNNIRELLARLQIGHLEAKHKALDNLYDVMKEDEKNVLAVLGRRNVAALVQLLTATSPRIREKTVTVICSLVESGSCEKWLVSEGVLPPLIRLVESGSAVSKEKAIVSLQRLSMSAETTRAIVGHGGVRPLIELCQSGDSVSQAAAACTLTNVSAVPEVRQALAEEGIVSVMINLLNCGILLGSKEYAAECLQNLTSSNEQLRKSVISEGGVRSLLTYLDGPLPQESAVGALRNLVGSVSEETLVSLSLLPRLVHVLKSGSLGAQQAAASVICRVCSSMEMKKMVGEAGCIPLLIKMLEAKANTAREVAAQAISSLMVLSQNRREVKKDDKSVPNLVQLLDPSTQNTAKKYAISCLGSLSPCKKCKKLMISYGAIGYLKKLTEMDIPGAKKLLERLERGKLRSLFSRK* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00059 560 Gene3D - 152 392 IPR011989 -
Lapu10g00059 560 SMART arm_5 351 389 IPR000225 GO:0005515
Lapu10g00059 560 SMART arm_5 390 429 IPR000225 GO:0005515
Lapu10g00059 560 SMART arm_5 267 307 IPR000225 GO:0005515
Lapu10g00059 560 SMART arm_5 308 349 IPR000225 GO:0005515
Lapu10g00059 560 SMART arm_5 185 225 IPR000225 GO:0005515
Lapu10g00059 560 SMART arm_5 430 470 IPR000225 GO:0005515
Lapu10g00059 560 SMART arm_5 471 513 IPR000225 GO:0005515
Lapu10g00059 560 SUPERFAMILY ARM repeat 156 537 IPR016024 -
Lapu10g00059 560 Pfam Armadillo/beta-catenin-like repeat 432 468 IPR000225 GO:0005515
Lapu10g00059 560 Pfam Armadillo/beta-catenin-like repeat 269 307 IPR000225 GO:0005515
Lapu10g00059 560 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 237 279 IPR000225 GO:0005515
Lapu10g00059 560 Gene3D - 393 540 IPR011989 -
Lapu10g00059 560 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 16 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00059 Lapu-Chr10 2037132 2040786 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00059 416 543 U-box Gene Family AT3G54790 29.688 6.21e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00059 - - var:108346326 997.653
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01603 1 28809908 28813677 Lapu10g00059 10 2037132 2040786 PCT