Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00058 ATGAGACCTGTTTTCTGTGGAAACCTCGATTTCGACGCGCGTCAATCTGATGTGGAGAGGCTCTTCAGAAGATACGGGAAAGTCGATAGAGTCGACATGAAATCTGGGTTTGCTTTCGTTTACATGGAAGATGAACGCGACGCTGAGTATGCAATCAGAAGGCTTGATAGAACAGAATTTGGTAGAAAGGGACGCCGGATTCGTGTTGAGTGGACTAAGCAAGAACGCGAAAGTAGGAGGTCAGGTGGTGACTCCAGAAAATCTTCATCTAATTCAAGGCCATCGAAAACTTTGTTTGTTATTAATTTTGATCCAGTTCACGCCAGGACAAGGGATCTGGAGAGACATTTTGACCCTTATGGGAAAATATTAAATATAAGGGTCAGAAGGAATTTTGCTTTTATTCAGTATGAATCACAGGAGGATGCTACTAGAGCTTTGGAGGCGACCAACTTGAGCAAGTTTATGGATCGTGTTATCACAGTGGAGTATGCCATAAGAGATGATGATGACAGAGATAGAAGGAACGGATACAGTCCTGAAAGAAGAGGTCATGACTCTCCTGATGGGAGATATGGACGTGGTAGATCACCTAGTCCATATCGTAGAGGTAGGGCTAGTCCAGATTATGGTCATGGATCAAATCCATCTTCCAAACCAGAAGCTAGAGGAAGCCCCAAGTATGAACGAGCTGAAAGTCCGATAAATGGGAGATATAATAGTCGGTCTCCACCACCCCGAGAAAGGTCACGTTCTTGA 759 0.4427 MRPVFCGNLDFDARQSDVERLFRRYGKVDRVDMKSGFAFVYMEDERDAEYAIRRLDRTEFGRKGRRIRVEWTKQERESRRSGGDSRKSSSNSRPSKTLFVINFDPVHARTRDLERHFDPYGKILNIRVRRNFAFIQYESQEDATRALEATNLSKFMDRVITVEYAIRDDDDRDRRNGYSPERRGHDSPDGRYGRGRSPSPYRRGRASPDYGHGSNPSSKPEARGSPKYERAESPINGRYNSRSPPPRERSRS* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00058 252 SUPERFAMILY RNA-binding domain, RBD 2 171 IPR035979 GO:0003676
Lapu10g00058 252 FunFam serine/arginine-rich splicing factor RS41 isoform X2 88 219 - -
Lapu10g00058 252 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 160 IPR000504 GO:0003723
Lapu10g00058 252 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 63 IPR000504 GO:0003723
Lapu10g00058 252 MobiDBLite consensus disorder prediction 170 192 - -
Lapu10g00058 252 Gene3D - 1 86 IPR012677 -
Lapu10g00058 252 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Lapu10g00058 252 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 107 235 - -
Lapu10g00058 252 MobiDBLite consensus disorder prediction 72 94 - -
Lapu10g00058 252 FunFam Serine/arginine-rich splicing factor RS31 1 85 - -
Lapu10g00058 252 SMART rrm1_1 3 70 IPR000504 GO:0003723
Lapu10g00058 252 SMART rrm1_1 97 163 IPR000504 GO:0003723
Lapu10g00058 252 Gene3D - 87 241 IPR012677 -
Lapu10g00058 252 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 167 IPR000504 GO:0003723
Lapu10g00058 252 MobiDBLite consensus disorder prediction 170 252 - -
Lapu10g00058 252 MobiDBLite consensus disorder prediction 72 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00058 Lapu-Chr10 2031475 2034823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00058 4 188 Eukaryotic Initiation Factors Gene Family AT1G49760 24.752 1.06e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00058 K12893 - gmx:100797778 416.001