Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00056 ATGGGTTTTGATACCAATTTGGTGACTACCATCATTGGGTTTGGGTTGAGTGCAACTTTCATTGTCTTTGTTTGCACAAGAATAATTTGTGGAAGACTACAAGAGCGTGTGGGAATACGAACTGTATATGAAATTGAACCAAGAACAGACATAGAACGGCCAGAATTTCATGGTAATGACCCTGAACCTGCTTTTGTAGCTGCAATCCCCACTTTGAGTTTCAACCAGGAAGCTTTCGTTTCAACGGGAAGCACACAGTGTGTGATATGTTTGGCAGAGTACAAAGAAAAAGAACTATTGCGCATAATACCAAAATGTGGCCACACTTTTCACCTTTCTTGCATTGATATGTGGCTGAGAAAACAATCCACTTGTCCAGTGTGTCGTTTGTCACTGCAAAATGCTTCTGAATCAAAACATGTCAGACATGTAACATTTACCATCAGACATTCTCTGGATGAGTCTAATACTTCAGGAAGGAACACAGACAGTGAGAGGCAAGTTAATTCTAGGATATCTCTACCATCATCTTTGGGAGAGCTAGAAGGTAGATAG 555 0.4054 MGFDTNLVTTIIGFGLSATFIVFVCTRIICGRLQERVGIRTVYEIEPRTDIERPEFHGNDPEPAFVAAIPTLSFNQEAFVSTGSTQCVICLAEYKEKELLRIIPKCGHTFHLSCIDMWLRKQSTCPVCRLSLQNASESKHVRHVTFTIRHSLDESNTSGRNTDSERQVNSRISLPSSLGELEGR* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00056 184 CDD RING-H2_EL5-like 86 129 - -
Lapu10g00056 184 PANTHER OS11G0150450 PROTEIN 3 162 - -
Lapu10g00056 184 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 139 IPR013083 -
Lapu10g00056 184 SMART ring_2 87 128 IPR001841 -
Lapu10g00056 184 SUPERFAMILY RING/U-box 86 135 - -
Lapu10g00056 184 Pfam Ring finger domain 86 129 IPR001841 -
Lapu10g00056 184 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00056 Lapu-Chr10 2012907 2013942 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00056 76 167 C3H Transcription Factor Family AT4G10160 40.217 3.43e-19 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00056 - - gmx:100810553 293.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01597 1 28747108 28748868 Lapu10g00056 10 2012907 2013942 PCT