Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00035 ATGACACTACAAATGCATCGAATCATTTCGTCAAAATCTCGAACCACCTTTTTCATGGCTTCATCTTCACCAACCTTCACCGCCATCTTCCTCCTCATCCTCTTCCACTTCCACCCTTCGTCGGCGCTCCCCCTCTCCGTGGAGAGCCCCGACCAAGACGTCATAGTTTCGCAGCCGAAGGGGACGTTCACGGCGGGGTTCAGGCGCGTCGGGGAGAACGCGTACTGCTTCGGCGTGTGGTTCTCGCAGGCGGAGAAGAGCGTGGTGTGGATGGCCAACCGCGACGCTCCCGTGAACGGGAAACGCTCCTCGCTCTCCCTCCTCAAGAACGGCAACCTCGTGTTGTCTGACGCCGGCCAGTTCGACGTTTGGGAGACCAATACTCGGAGGGAGAAGCCGCTGGAGTTGCATTTGCATGACACCGGGAATCTCGTGCTCCGGGAACAGACCAATAGAAGCTCTGTTTTGTGGCAAAGCTTTAATTTTCCCACCGATACACTCCTCCCTGGCCAGATTCTCACCAGGTTCACGAAGCTTGTATCGTCGAGAAGTGAGGGCAACTATTCCTCTGGTTTTTACAAGCTATTCTTCGACAACGACAACGTTTTCCGTCTTCTGTACGAGGGTCCTCAAGTTTCAAGCGTTTACTGGCCAGATCCTTGGCTAGTTAGCAACAACGTTGGGAGTGGTAACGGAAGATCCACGTACAATAGTAGCAGAGTTGCAGTTCTAGATGAGTTTGGCAAATTCAGTGCTTCTGATCATTTCAATTACAAGACAATTGATTATGGGCTACTCATTCAACGAAGGTTGACCCTTGACTATGATGGCAATGTTCGTTTCTATAGCAGAAAAGATGGTGAAGATTGGTCAATAACAGGGCAATTCAAATCACAGCCTTGTTTCGTTCATGGGATTTGTGGACCCAACAGTATATGCAGTTATGAACAAGCAACTGGTAGAAAGTGTGAGTGTCTTGAAGGGTTTAGTTGGATTGATAGTCAAGATTGGTCTTTGGGTTGCAAACCGAATTTCCAACCTACTTGTGATAACAAGACAGAATATCGCCTTGTACCCTTGGATGAAGTGGATTTTTATGGTTATGACTATGGATCTTCCTTTTCAAATTACACATATAAACAGTGCGAGAAACTATGCTTGGAACTGTGCGAGTGCATGGCCTTTCAGTACAGCTTTGCCGCAGAGAATGGCCTCTTTTGGTGTTACCCAAAGACGCAGTTGCTAAATGGACACCGTTCACCCGGTTTCACAGGAAAAATTTTCTTGCGTCTGCCGAAAACAAGTGTTCAAGAGAATCACTTGCAAAACAATGATGGCTTGGTTTGTTCGAGAAATGCAGAAGAACTACTAGAAAGAGCATATGTGAAAGGCAAGGAAAATGGGTCCGTTAAGTTCGTGCTTTGGTTTGCAGTTGGGTTGGGAGGGTTTGAGATCGTGTGCATCTTTTTGGTGTGGTGTTTCTTGTTTAGGAGTAGCAACCATTTGGTTAGTGCAGATCAACACGGATATGTTCTTGCCGCAGCTACAGGTTTCAGAAGGTACACTTACTCTGAACTGAAACGAGCCACAAAGGGTTTCAGTGAAGAGATTGGAAGGGGTGCCGGAGGGATAGTGTACAAGGGTGTATTATCAGATAACCGAGTTGCAGCAATAAAAAGGCTACACGAATTTGCAGACCAAGGAGAGAGTGAGTTCCTCACTGAAATGAGCATCATTGGAAGGCTTAATCATATGAACTTAATTGGCATGTGGGGGTATTGTGTAGAAGGAAAACACAGGATGCTGGTTTATGAGTACATGGAAAATGGCTCTTTGGCCAATAATCTCCCATCAAATTCACTTGATTGGAGCAAGAGGTATAACATTGCGGTGGGAATGGCAAAGGGTTTGGCCTATTTACATGAAGAGTGCTTGGAGTGGATCTTGCATTGTGATATCAAGCCTCAAAACATACTTCTTGACTCTGATTACCAAGCCAAGGTAGCTGATTTTGGCTTGTCCAAGCCATTGAATAGAAACAACCTCAACAACTCAAGCTTCTCTAGAATAAGAGGCACAAGGGGTTACATGGCACCAGAATGGGTTTTCAACATGCAAATCACTTCCAAGGTGGATGTTTACAGCTATGGAATTGTTGTGTTGGAGATGATAACTGGGAGGAGTCCAATGACAGGAGTCCAAGTTACAGAAGTAGGGGCAGAGTCCCATAATGAGAGGTTGGCAACATGGGTGAGGGAAAAAAGGAGAAAAGCAGCAGAAGGGGCATGTTGGGTGCAACAAATTGTTGACCCCACTTTAGGATCAGATTATGACATGAAGCAGATGGAGATCTTGGCCAAAGTGGCTCTGGAATGTGTAGAGGAAGAGAAAGATGTGAGACCTAGCATGAGTCAAGTCGTTGAGAGGCTCAGTCATGAACAGGAGTCTTAA 2451 0.4623 MTLQMHRIISSKSRTTFFMASSSPTFTAIFLLILFHFHPSSALPLSVESPDQDVIVSQPKGTFTAGFRRVGENAYCFGVWFSQAEKSVVWMANRDAPVNGKRSSLSLLKNGNLVLSDAGQFDVWETNTRREKPLELHLHDTGNLVLREQTNRSSVLWQSFNFPTDTLLPGQILTRFTKLVSSRSEGNYSSGFYKLFFDNDNVFRLLYEGPQVSSVYWPDPWLVSNNVGSGNGRSTYNSSRVAVLDEFGKFSASDHFNYKTIDYGLLIQRRLTLDYDGNVRFYSRKDGEDWSITGQFKSQPCFVHGICGPNSICSYEQATGRKCECLEGFSWIDSQDWSLGCKPNFQPTCDNKTEYRLVPLDEVDFYGYDYGSSFSNYTYKQCEKLCLELCECMAFQYSFAAENGLFWCYPKTQLLNGHRSPGFTGKIFLRLPKTSVQENHLQNNDGLVCSRNAEELLERAYVKGKENGSVKFVLWFAVGLGGFEIVCIFLVWCFLFRSSNHLVSADQHGYVLAAATGFRRYTYSELKRATKGFSEEIGRGAGGIVYKGVLSDNRVAAIKRLHEFADQGESEFLTEMSIIGRLNHMNLIGMWGYCVEGKHRMLVYEYMENGSLANNLPSNSLDWSKRYNIAVGMAKGLAYLHEECLEWILHCDIKPQNILLDSDYQAKVADFGLSKPLNRNNLNNSSFSRIRGTRGYMAPEWVFNMQITSKVDVYSYGIVVLEMITGRSPMTGVQVTEVGAESHNERLATWVREKRRKAAEGACWVQQIVDPTLGSDYDMKQMEILAKVALECVEEEKDVRPSMSQVVERLSHEQES* 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00035 816 Pfam S-locus glycoprotein domain 267 330 IPR000858 GO:0048544
Lapu10g00035 816 Pfam Protein kinase domain 534 808 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu10g00035 816 SMART blect_4 46 163 IPR001480 -
Lapu10g00035 816 ProSiteProfiles Protein kinase domain profile. 531 815 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu10g00035 816 CDD STKc_IRAK 537 810 - -
Lapu10g00035 816 ProSitePatterns Protein kinases ATP-binding region signature. 537 559 IPR017441 GO:0005524
Lapu10g00035 816 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 218 IPR036426 -
Lapu10g00035 816 CDD PAN_AP_plant 345 432 - -
Lapu10g00035 816 Gene3D Phosphorylase Kinase; domain 1 498 606 - -
Lapu10g00035 816 FunFam S-receptor-like serine/threonine-protein kinase 499 606 - -
Lapu10g00035 816 PIRSF SRK 15 816 IPR024171 GO:0004674
Lapu10g00035 816 ProSitePatterns Serine/Threonine protein kinases active-site signature. 648 660 IPR008271 GO:0004672|GO:0006468
Lapu10g00035 816 PANTHER OS07G0415500 PROTEIN 27 811 - -
Lapu10g00035 816 Gene3D Transferase(Phosphotransferase) domain 1 607 816 - -
Lapu10g00035 816 SMART serkin_6 531 815 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu10g00035 816 CDD B_lectin 59 163 IPR001480 -
Lapu10g00035 816 SUPERFAMILY Protein kinase-like (PK-like) 515 810 IPR011009 -
Lapu10g00035 816 ProSiteProfiles Bulb-type lectin domain profile. 39 159 IPR001480 -
Lapu10g00035 816 Gene3D - 41 161 IPR036426 -
Lapu10g00035 816 FunFam Serine/threonine-protein kinase 607 816 - -
Lapu10g00035 816 Pfam D-mannose binding lectin 88 174 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00035 Lapu-Chr10 1649679 1652655 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00035 521 816 Trihelix Transcription Factor Family AT5G38560 42.525 3.36e-68 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Lapu10g00035 Pkinase 3.9e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00035 - - gmx:100806357 1399.8