Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00022 ATGGGTAGAGGGAGGGTTGAGCTGAAGAGGATAGAGAACAAAATCAACCGCCAAGTTACTTTCTCAAAAAGAAGGAACGGTTTGCTCAAGAAAGCCTATGAGCTCTCAGTTCTCTGTGATGCTGAGGTTGCTCTCATCATTTTCTCAAGCCGAGGGAAGCTCTATGAATTTGGAAATGTTGGCATTACCAAAACTATTGAGCGATACCAACGTTGCTCGTTTACTCCTCAAGATGAACATGTTGAATGTGAAACTCAGAGCTGGTACCAAGAGGTGTCCAAGCTAAAGGCAAAGTACGAGTCTCTTCAAAGGACCCAGAGGCATTTGCTTGGAGAAGATCTTGGACCATTGAATATAAAGGAGCTGCAGAATCTTGAGAAACAGCTTGAAGGGGCATTAGCACAAGCTAGACAAAGGAAGACACAAATCATGATTGAACAGATGGAAGAGCTTCGCAGAAGGGAGCGCCATCTTGGAGACATGAACAAACAGCTTAGACTCAAGCTTGAATCAGAGGGATTTAATCTTAAAGCTATGGAAAGCTTGTGGAGCTCTACTTCAGCTGCTGGAAATAGTGCCTTCCCCTTTCAGCCTGCTCAAACCAATCCTTTGGATTATCAGACTGAACCCTTTTTGCAAATAGGGTACCATCAATATGTTCAGGCTGAGGCATCTAGTGTTCCAAAGAGCATGGCTTGTGAGACTAACTTCATGCAGGGATGGATCCTTTGA 732 0.4413 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGNVGITKTIERYQRCSFTPQDEHVECETQSWYQEVSKLKAKYESLQRTQRHLLGEDLGPLNIKELQNLEKQLEGALAQARQRKTQIMIEQMEELRRRERHLGDMNKQLRLKLESEGFNLKAMESLWSSTSAAGNSAFPFQPAQTNPLDYQTEPFLQIGYHQYVQAEASSVPKSMACETNFMQGWIL* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00022 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lapu10g00022 243 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lapu10g00022 243 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Lapu10g00022 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lapu10g00022 243 Pfam K-box region 84 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lapu10g00022 243 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Lapu10g00022 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 179 - -
Lapu10g00022 243 Coils Coil 148 168 - -
Lapu10g00022 243 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Lapu10g00022 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lapu10g00022 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lapu10g00022 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lapu10g00022 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lapu10g00022 243 Coils Coil 119 142 - -
Lapu10g00022 243 FunFam MADS-box transcription factor 1 13 87 - -
Lapu10g00022 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00022 Lapu-Chr10 1237379 1243563 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00022 1 243 MADS-box Gene Family AT2G45650 66.667 4.43e-117 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lapu10g00022 K-box 2.3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00022 K09264 - gmx:100820061 447.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00022 10 1237379 1243563 Lapu10g00022 10 1237379 1243563 ECH