Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00009 ATGCCATCGCGTCCGCCGCCACCATCCCCTCACGGGGCGGTTGCCGCCGTCACTCACCGCCGAGAAATGATTCTCTGCGGCGCAATCGGCGGAGCGGTCTTGCTGACGGCGCTGATCGTTTCCGTCACGGTCTTTCTCTACCGTAAACTATCCTACAACCGAACGGCGCCGTTCGAACACAACCAGCGGCGTTTCTCGTACTCCGTACTCCGCCGTGCGACGAACTCGTTCTCTCCGTCGACGAAGCTCGGGCACGGTGGGTTCGGTTCGGTTCACAAAGCGACTTTACCTTCCGGCCAGACGGTGGCGTTGAAAGTGATGGACTCGCCTGGGTCAATCCAGGGGGAGAGAGAGTTCCACAACGAGTTGACGCTGTGTTCGAATCTAAAGTCGCCGTTTGTTATTTCGTTGCTCGGTTTTTCTTCGGACCGGCGCGGTCGGAAGCTGGTTTTGGTTTACGAGCTGATGCCGAACCGGAGTTTGCAGGATGCGCTGCTGGACCGGCGGTGTCCGGAGCTGATGTGTTGGGGGAAGAGGTTTGACGTCGCCGTTTCGGTGGCGATGGGGTTGGAGTATTTGCACCATGTGTGTGAGCCTCCGGTGATTCATGGGGATATAAAGCCGAGTAATGTGTTGCTGGATGAGGATTTTGGAGCGAAGATTGGGGATTTTGGGCTTGCTAGGGTTAAGGCAGTGGAGGATCTGGGAATGGTGGAGGAGAAGAAGAAGGAAGGGGTTGTGGAGATTGGGGTTGAGGAGTTTGGGGTGATGGAGGAGGGGGAGAGTGTGAGTGTGGTGGATGTTGACCGGTCGCCGGAGAGTTGTCCGGTGAGGGTTGTTGATTACTCGGACGCGTCGCCGGTAGGGGGTGATAAGTTGAGTGTGGTGTCGGATGGGTGCTTTGAGAGTGTTGATAGTGAGAATGTGAATTTGAATAAGAAGAAGGGTGGTGGTGGTGGTTCAGGGAGGGATTGGTGGTGGAGGCAGGAGAGTGGGGGAGGGGGGGAATCTGGGAGGGTGAAGGATTATGTGATGGAATGGATCGGGAGTGAGATAAAGAAAGAGAGGCCCAAGAGTGAATGGGTTGATTCGTGTTCATCTTCTTCTCCTAAGGTGGAGAATGAGAATGGGAATGTCAATGGGGGTGAGAAGAGTAAGAGTAAGAAGAAGGAGAGGAAGAGGTTGGATTGGTGGGCTTCTCTTGATGAGGATAAGGTTAAGAGTAAGGTGAAGAAGAATCGGAAGCCGAGGGAGTGGTGGAAGGAGGAGTTTTGTGAGGAGTTGTCTAAGAAGAATAGGAAGAAGAAGAGGGGTTTGGAGTGGTGGCAGAGGGAGGAGGAAGGGGTGGAGCAGAAGAAGAAGAGGAAGAGTAAGGGGAGTAGAGGGAGTATTGATTGGTGGTTGGATGGGTTGAGTGGGGAGATAAGGAACAATGGGAGGAGGAATAGCCAGGATTGGGGGGTTAGTGGGGATGTGCCAAAGAGTGGTGGGATCAGTAGCACCCCAAGTATGAGGGGAACTGTGTGTTACATTGCTCCTGAGTATGGTGGAGGAGGCCAATTGTCTGAAAAGTGTGATGTGTACAGTTTTGGGGTTCTGCTTTTGGTTCTGGTGGCGGGGAGGCGGCCGCTGCAGGTGACCGCATCGCCGATTTCTGAGTTTGAGAGGGCCAATTTGATTTCCTGGGCCAGGCAGCTTGCTCACAATGGGAGGCTTTTAGATCTTGTAGACACTTCTATTCATTCATTGGATAAGGAGCAGGCTCTGCTCTGCATCACCATTGCCTTGTTGTGTTTGCAGAGGTGCCCCGGGAAGAGGCCTTCCATGAAGGAGGTTGTGGGAATGCTCAATGGGGAAGCTGATCCACCACACTTACCGTTCGAGTTCTCACCATCACCGCCGTCAAATTTCCTGTTCAAGGGGCGGAAGAAGGCTCGGTGA 1941 0.5389 MPSRPPPPSPHGAVAAVTHRREMILCGAIGGAVLLTALIVSVTVFLYRKLSYNRTAPFEHNQRRFSYSVLRRATNSFSPSTKLGHGGFGSVHKATLPSGQTVALKVMDSPGSIQGEREFHNELTLCSNLKSPFVISLLGFSSDRRGRKLVLVYELMPNRSLQDALLDRRCPELMCWGKRFDVAVSVAMGLEYLHHVCEPPVIHGDIKPSNVLLDEDFGAKIGDFGLARVKAVEDLGMVEEKKKEGVVEIGVEEFGVMEEGESVSVVDVDRSPESCPVRVVDYSDASPVGGDKLSVVSDGCFESVDSENVNLNKKKGGGGGSGRDWWWRQESGGGGESGRVKDYVMEWIGSEIKKERPKSEWVDSCSSSSPKVENENGNVNGGEKSKSKKKERKRLDWWASLDEDKVKSKVKKNRKPREWWKEEFCEELSKKNRKKKRGLEWWQREEEGVEQKKKRKSKGSRGSIDWWLDGLSGEIRNNGRRNSQDWGVSGDVPKSGGISSTPSMRGTVCYIAPEYGGGGQLSEKCDVYSFGVLLLVLVAGRRPLQVTASPISEFERANLISWARQLAHNGRLLDLVDTSIHSLDKEQALLCITIALLCLQRCPGKRPSMKEVVGMLNGEADPPHLPFEFSPSPPSNFLFKGRKKAR* 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00009 646 Pfam Protein kinase domain 485 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu10g00009 646 Pfam Protein kinase domain 80 229 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu10g00009 646 MobiDBLite consensus disorder prediction 359 391 - -
Lapu10g00009 646 MobiDBLite consensus disorder prediction 478 497 - -
Lapu10g00009 646 PANTHER OS07G0586332 PROTEIN 2 646 IPR044576 -
Lapu10g00009 646 MobiDBLite consensus disorder prediction 312 339 - -
Lapu10g00009 646 SUPERFAMILY Protein kinase-like (PK-like) 52 634 IPR011009 -
Lapu10g00009 646 Gene3D Phosphorylase Kinase; domain 1 41 155 - -
Lapu10g00009 646 SMART serkin_6 77 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu10g00009 646 ProSitePatterns Protein kinases ATP-binding region signature. 83 105 IPR017441 GO:0005524
Lapu10g00009 646 FunFam Os07g0541700 protein 156 244 - -
Lapu10g00009 646 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Lapu10g00009 646 ProSiteProfiles Protein kinase domain profile. 77 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu10g00009 646 MobiDBLite consensus disorder prediction 624 646 - -
Lapu10g00009 646 MobiDBLite consensus disorder prediction 362 381 - -
Lapu10g00009 646 Gene3D Transferase(Phosphotransferase) domain 1 156 248 - -
Lapu10g00009 646 Gene3D Transferase(Phosphotransferase) domain 1 475 622 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00009 Lapu-Chr10 1006662 1010624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00009 494 616 Receptor kinase-like Gene Family AT3G58690 37.209 9.09e-14 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Lapu10g00009 Pkinase 1.6e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00009 - - gmx:100814933 1013.06