Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1517 ATGTCACTGAATCGAAGGCTTTCTTCTTCAAATGGGAAATTGCAACAAAGTATGAAGTTTTTTAAGGGAAATGAGCCTTTGCATCGGTCTAATTCTGATAGGACATGTAGAAGGAAGCCTTTGCTTCTCTTGATTTTTGGTCTTGTTGCTATTGGAAGTGTTTGGTTTTTGTTGACTTTCAATATTAAGTGTTTGATGAGCAAGGGTAATGAAGCAATTTGTGGAGAGAGAGCAAGAATCATGCTACATCGTTATAATGTCAGCAAGAAGCAGCTTCACGCTCTGGCTTCTCTATTCTCTGGATCAGATAAGAACATTGTGCAGTCATGGAAACTACGAGTACGTGAAATTAAGGATTTTATGAGTTTATCAAATTTGGTTAAAGGAAGTTGGTGGGCCCTTATAGGAATTTTGATGTCCTACAAGTTGTCTGGCTTCTGTTTATTATGGAGGAGCCAAAAGCATAAGGTAGTGAAGGGGCATCCGGTTGCTCAGAAAAAGAAGCTGCAACATTTTGTTCGGGGTCCTTCAAAGAGTGCTGGGAGGTGGAGGAAAAAGTTTCTAGTTATATTTGTATCACTTGGAGTAGTTGGGTCCATTTGGTTATTCTGGCACCTAAACATGAACATTATGCAGAGACGAGAACACTTGCTTGCTAATATGTGTGATGAGCGAGCCCGTATGCTGCAAGATCAGTTCAATGTGAGCATGAACCATGTTCACGCCCTGGCTATTCTTGTATCTACCTTTCACCATGATAAACATCCTTCTGCAATCAACCAGAAAATTTTTGGGGAATATACAGAGAGTACAGCATTTGAGAGACCACTTACTAGCGGTGTTGCTTATGCTATGAAAGTTCTCCACTCTGACAGGAAGCATTTTGAGAGGCAGCACGGGTGGACAATTAAAAAAATGGAAACCGAGAATGAAGCACTAGTCCAAGATTGTATTCCAGAAAATTTGGATCCGACTCCCTTTCAAGACGAATATGCACCAGTCATATTTGCTCAAGAAACAGTTTCCCATATTGTATCTATTGACATGATGTCAGGGAAGGAGGACGGAGAAAATATTTTGCGGGCAAGGGCATCAGGAAAGGGGGTTCTGACATCTCCATTTAAACTACTCAAGTCCAATCACCTGGGTGTCGTACTTACATTTGCTGTTTATAACACTAACCTTCCTCCAAATGCTACATCGGAGCAGCGCATTGAAGCTACTGTGGGGTATCTCGGTGCATCTTATGATGTTCCATCACTGGTGGACAAGCTTTTGCACCAACTTGCCAGCAAACAGACCATTGCTGTCAATGTTTATGATACAACTAATGCATCTGCGCCCATCACAATGTATGGTACTGATGTTGTTGACACTGGCCTACTACATATAAGTAGCCTAGATTTTGGGGATCCGCTACGAAAGCATGAGATGCACTGCAGGTTCAAGCAGAGGCCTCCATTACCTTGGACAGCAATAAATGCATCAGTGGGGGTGCTTGTTATTACTTTGCTTCTTGGACATATTTTTTATGCAGCAATAGATCGGATAGCAAAAGTGGAGGATGACTATCGTAAAATGAGGGAGCTCAAAGTTCGTGCTGAAGCTGCAGATGTGGCAAAATCTCAGTTTCTTGCGACGGTTTCACATGAGATCAGGACTCCAATGAATGGTGTTTTAGGTATGCTGCAAATGTTGATGGACACTGACCTTGATGAAAACCAGATGGACTATGCCCAAACTGCTCATAGGAGTGGTAAAGATCTTATATCAGTGATAAATGAGGTTCTTGATCAGGCAAAGATCGAGGCAGGAAAGCTTGAACTTGAAGCTGTAGCTTTCAACCCACATGCTATTCTAGATGAAGTTCTATCACTTTTCTTAGGCAAATCTAATGAGAAAGGAATTGAGTTGGCCGTTTATGCATCCAATGAAGTACCTGAAGTTGTTATTGGTGATCCTAAACGGTTCCGGCAAATAATTACCAATCTTGTTGGCAATTCACTGAAGTTCACTAATGATAAAGGACATGTATTAGTATCTGTTCATCTGGCGAATGAAGTGAAGAACCCTCTTGATATCATGGATGCAGTGCTGAGAGAAGGCTTAAACTTAGACCAAGACATGTCAGACAGAACATATAATACATTAAGTGGGTTCCCTATAGACGAGAGGTGGAAAAGCTGGGAAAATTTTAAAATGTTAGGTAGTTTAAATACAGATGATCCTGACATGATTCAACTTCTAGTAACAGTTGAGGATACAGGTATAGGAATTCCTATGGACGCGCAAAGCCGCATATTCACACCTTTTATGCAGGCTGATAGTTCAACCTCTCGAACATATGGTGGAACTGGAATAGGACTGAGCATTAGTAAATGTCTTGTTGACCTCATGGGAGGAGAAATTGGATTTGTAAGTGAGCCTGGAATTGGCAGTACTTTCTCATTCACTGGAACTTTCAGAAAAGGAGATACCGTATCTATGGATGCAGAGTGGCAGAAGTACAACCTTTTTGCTTCACAGTGTCAAGGGCTGAGAGCATTGGTAGTAGATAGAAGAAAAGTACGAGCCGTGGTCACTAGATATTATCTTCAGAGGTTGGGGATGTCTGTGGATGTAACTTCCAGTTTGAAATCTGCATGCTCTTGTGTATCTGGTACTTGCAACATGAGTATGTCGACACACTTGGCCATGATTCTTATAGAAAAGGATGCTTGGGATAAGGAAAGTAGTATCCTATACACCATCGAGAAACACAAACAAAATAGCATCAGCAGGGCCGGAATGAACTTTCCAAAGATTTTTCTCCTGGCCGCCCACCTTAGCACCAATGAACGCGATGAGCTCAAGTCCATTGGTGTTGTAGATGATGTACTAATGAAGCCTCTTTGGCTCGGTGCTTTGGTTCGCTGCTTCAGAGAGTCCCGTGGAACTGAAAAGAGGCATACAGATAGGAAGAGAGTATCAAAACTTGGGAATTTATTAATAAACAAAAGAGTTTTGGTGGTGGATGATAATGCAGTGAACAGAAAAGTTGCAGAAGGTGTTCTGCAAAGATATGGGGCAATAGTTACTTGTGTGGAGAGTGGCAGGGCTGCTCTACGGATGCTTAAGCTACCACATAATTTTGATGCTTGTTTCATGGATCTCCGGATGCCAGAAATGGATGGTTTTGAAGTGACGAGGCAAATCCGAAGTCTAGAGAGTGAGGTAAATGAGAAAATCGCGAGTGGGAAAACATCAGCAGCGATGTATGGTAATATCGGTTATTGGCACACTCCAATACTAGCAATGACAGCTGATGTAACACAAGATTCAAATGAAGAGTGCAGAAAGTGTGGGATGGATGAGTATGTGTCTAAGCCATTTGAAGAAGAGCAGCTCTATATGGCAGTGTCACATTTCTTTAAGCCTGCTTCATAG 3426 0.418 MSLNRRLSSSNGKLQQSMKFFKGNEPLHRSNSDRTCRRKPLLLLIFGLVAIGSVWFLLTFNIKCLMSKGNEAICGERARIMLHRYNVSKKQLHALASLFSGSDKNIVQSWKLRVREIKDFMSLSNLVKGSWWALIGILMSYKLSGFCLLWRSQKHKVVKGHPVAQKKKLQHFVRGPSKSAGRWRKKFLVIFVSLGVVGSIWLFWHLNMNIMQRREHLLANMCDERARMLQDQFNVSMNHVHALAILVSTFHHDKHPSAINQKIFGEYTESTAFERPLTSGVAYAMKVLHSDRKHFERQHGWTIKKMETENEALVQDCIPENLDPTPFQDEYAPVIFAQETVSHIVSIDMMSGKEDGENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNTNLPPNATSEQRIEATVGYLGASYDVPSLVDKLLHQLASKQTIAVNVYDTTNASAPITMYGTDVVDTGLLHISSLDFGDPLRKHEMHCRFKQRPPLPWTAINASVGVLVITLLLGHIFYAAIDRIAKVEDDYRKMRELKVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTDLDENQMDYAQTAHRSGKDLISVINEVLDQAKIEAGKLELEAVAFNPHAILDEVLSLFLGKSNEKGIELAVYASNEVPEVVIGDPKRFRQIITNLVGNSLKFTNDKGHVLVSVHLANEVKNPLDIMDAVLREGLNLDQDMSDRTYNTLSGFPIDERWKSWENFKMLGSLNTDDPDMIQLLVTVEDTGIGIPMDAQSRIFTPFMQADSSTSRTYGGTGIGLSISKCLVDLMGGEIGFVSEPGIGSTFSFTGTFRKGDTVSMDAEWQKYNLFASQCQGLRALVVDRRKVRAVVTRYYLQRLGMSVDVTSSLKSACSCVSGTCNMSMSTHLAMILIEKDAWDKESSILYTIEKHKQNSISRAGMNFPKIFLLAAHLSTNERDELKSIGVVDDVLMKPLWLGALVRCFRESRGTEKRHTDRKRVSKLGNLLINKRVLVVDDNAVNRKVAEGVLQRYGAIVTCVESGRAALRMLKLPHNFDACFMDLRMPEMDGFEVTRQIRSLESEVNEKIASGKTSAAMYGNIGYWHTPILAMTADVTQDSNEECRKCGMDEYVSKPFEEEQLYMAVSHFFKPAS* 1142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1517 1141 CDD HisKA 540 601 IPR003661 GO:0000155|GO:0007165
Lan9g1517 1141 Pfam His Kinase A (phospho-acceptor) domain 540 605 IPR003661 GO:0000155|GO:0007165
Lan9g1517 1141 SUPERFAMILY CheY-like 998 1137 IPR011006 -
Lan9g1517 1141 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 652 818 IPR003594 -
Lan9g1517 1141 PANTHER HISTIDINE KINASE 2 172 1138 - -
Lan9g1517 1141 ProSiteProfiles CHASE domain profile. 255 479 IPR006189 -
Lan9g1517 1141 SUPERFAMILY CheY-like 843 974 IPR011006 -
Lan9g1517 1141 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 527 606 IPR036097 GO:0000155|GO:0007165
Lan9g1517 1141 Pfam CHASE domain 258 452 IPR006189 -
Lan9g1517 1141 SMART HisKA_10 540 605 IPR003661 GO:0000155|GO:0007165
Lan9g1517 1141 CDD HATPase_EvgS-ArcB-TorS-like 657 818 - -
Lan9g1517 1141 ProSiteProfiles Histidine kinase domain profile. 547 823 IPR005467 -
Lan9g1517 1141 ProSiteProfiles Response regulatory domain profile. 1000 1137 IPR001789 GO:0000160
Lan9g1517 1141 Gene3D - 66 105 - -
Lan9g1517 1141 Gene3D - 206 258 - -
Lan9g1517 1141 SMART REC_2 999 1133 IPR001789 GO:0000160
Lan9g1517 1141 Coils Coil 517 537 - -
Lan9g1517 1141 SMART HKATPase_4 652 823 IPR003594 -
Lan9g1517 1141 CDD REC_hyHK_CKI1_RcsC-like 1001 1133 - -
Lan9g1517 1141 PANTHER TWO-COMPONENT HISTIDINE KINASE 172 1138 - -
Lan9g1517 1141 Gene3D - 997 1140 - -
Lan9g1517 1141 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 594 818 IPR036890 -
Lan9g1517 1141 SMART CHASE_2 255 454 IPR006189 -
Lan9g1517 1141 Gene3D - 604 824 IPR036890 -
Lan9g1517 1141 Gene3D - 512 603 - -
Lan9g1517 1141 Gene3D CHASE domain 259 486 IPR042240 -
Lan9g1517 1141 PRINTS Bacterial sensor protein C-terminal signature 748 762 IPR004358 GO:0016310|GO:0016772
Lan9g1517 1141 PRINTS Bacterial sensor protein C-terminal signature 766 776 IPR004358 GO:0016310|GO:0016772
Lan9g1517 1141 PRINTS Bacterial sensor protein C-terminal signature 783 801 IPR004358 GO:0016310|GO:0016772
Lan9g1517 1141 PRINTS Bacterial sensor protein C-terminal signature 807 820 IPR004358 GO:0016310|GO:0016772
Lan9g1517 1141 Pfam Response regulator receiver domain 1001 1133 IPR001789 GO:0000160
Lan9g1517 1141 ProSiteProfiles Response regulatory domain profile. 847 977 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1517 Lan-Chr9 21670505 21681178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1517 123 1140 Miscellaneous Gene Families AT5G35750 65.034 0.0 1351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lan9g1517 CHASE 1.2e-33 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1517 K14489 - gmx:100805107 1724.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1392 2 24482307 24491048 Lan9g1517 9 21670505 21681178 LSH