Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1509 ATGAAGCTTGATTCAATGAATTCTAGGTGCTCCTTTCATTCAAGCAGCATGGTTTCATTGTCTTCAAATTCTGCACGAGGAGAAGAAGATAGAGTGGTTAGTGATCTAAATAGGCCTCTATCACACAACTTGGCGCCTTCTTTTTCGATTCGGATGGCTATGAGAATATCTAGAGCAAGGTGGTTTGGCTTCTTAAGAAGAGTATTTCATTACCAAAATGGACCAAGGTCACACCATGACACTAACCCTTTCGATTCTAGCATATGGATGATGCTGGAGTTCATTGCTTTGGTGGTGCAGATAATTATTACAACATCTACTTTGGCCATGTCAAAGAGGGAGAGACCTGTTTGGCCTATGAGGATATGGGCAACTAGTTATGATATTGGTTGTGTTCTTAATCTGCTGTTACTTTATGGGCGCTACCATCAAATATATTTGACTCCAGGAGATACTCTTAACCTTTCTGATCTGGAACATCAGAGAAACAATGAAGAAACCAGGTTTCCACATTTAATGAATAAGTGCAAGACTTCACTTGAGCTTTTCTTTGCCATATGGTTTGTGATGGGCAATGTTTGGATTTTTGAGTCATCACGTTTTGGATATTACAATGAAGCTCCAAAGCTTCATGTGCTCTGCATCACCTTACTTGGTTGGAATGCTATCTGCTATTCTTTCCCTTTCCTACTGTTTGTGCTGTTATGTTGTTGTGTGCCACTTATTAATTGCATCCTCGGATACAACATGGTCTCTTCTGATAAAGGAGCAACTGATGATCAAATTTCACAACTTCCAAGTTGGACACATAAACATGTCCATACCAACTTAGAGCTTGTTGGCAATGATTCTGAAGGCTGTGAAAATTTGATTAATGAAGATCCTGAATGCTGCATTTGCTTAGCCAAGTATAAAGAGAAAGAAGAAGTTAGAGAATTGCCCTGTTCTCATATATTCCATAAAAAATGTGTGGATCAATGGCTAAAAATAATATCCTGCTGCCCTCTTTGCAAACAAGGATTAGAGAGGACAAAATAG 1038 0.3892 MKLDSMNSRCSFHSSSMVSLSSNSARGEEDRVVSDLNRPLSHNLAPSFSIRMAMRISRARWFGFLRRVFHYQNGPRSHHDTNPFDSSIWMMLEFIALVVQIIITTSTLAMSKRERPVWPMRIWATSYDIGCVLNLLLLYGRYHQIYLTPGDTLNLSDLEHQRNNEETRFPHLMNKCKTSLELFFAIWFVMGNVWIFESSRFGYYNEAPKLHVLCITLLGWNAICYSFPFLLFVLLCCCVPLINCILGYNMVSSDKGATDDQISQLPSWTHKHVHTNLELVGNDSEGCENLINEDPECCICLAKYKEKEEVRELPCSHIFHKKCVDQWLKIISCCPLCKQGLERTK* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1509 345 ProSiteProfiles Zinc finger RING-type profile. 297 338 IPR001841 -
Lan9g1509 345 SUPERFAMILY RING/U-box 289 341 - -
Lan9g1509 345 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 24 342 - -
Lan9g1509 345 Pfam Ring finger domain 296 338 IPR001841 -
Lan9g1509 345 SMART ring_2 297 337 IPR001841 -
Lan9g1509 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 343 IPR013083 -
Lan9g1509 345 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 24 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1509 Lan-Chr9 21644136 21646650 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1509 48 341 C3H Transcription Factor Family AT4G26580 65.101 1.03e-131 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1509 - - gmx:100813670 511.146