Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1501 ATGGCGGACTCGGATAACGACTCAGGAGGTCAGAACGTGGGAAATGCGCAAGGAGAGTTATCGTTGCGAGAACAAGACCGTTTCCTTCCGATTGCGAACGTGAGCAGGATCATGAAGAAGGCTTTACCAGCGAACGCTAAGATATCAAAGGACGCAAAGGAAACCGTTCAGGAGTGCGTGTCGGAGTTCATAAGCTTCATCACCGGCGAAGCCTCCGATAAGTGCCAGAGGGAGAAGCGTAAGACGATAAACGGCGACGATTTGCTGTGGGCGATGACAACGCTAGGGTTCGAGGAGTACGTGGAGCCGCTGAAGGTGTACCTACAGAGATTCAGGGAAATGGAAGGGGAGAAGACAGTGGCGGCGCGTGACAAAGAAGGGAGTGTTGGTAGTGCTGTTAACAGTGGTTATGATTATGGAGCTGCAAATGCAATGGAGATGATGATGCATCATCAGGGACACGTGTACGGTTCCGGTGGCAGTGGCTCTGTTGTTATGGGTAATAAGGGTGGGCCCAGTTACCCTGCTTCTGGATCTAATGCAGGTAGACCCAGATAG 558 0.5179 MADSDNDSGGQNVGNAQGELSLREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQRFREMEGEKTVAARDKEGSVGSAVNSGYDYGAANAMEMMMHHQGHVYGSGGSGSVVMGNKGGPSYPASGSNAGRPR* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1501 185 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 28 92 IPR003958 -
Lan9g1501 185 Gene3D Histone, subunit A 17 147 IPR009072 GO:0046982
Lan9g1501 185 MobiDBLite consensus disorder prediction 1 19 - -
Lan9g1501 185 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2 1 151 - -
Lan9g1501 185 SUPERFAMILY Histone-fold 25 126 IPR009072 GO:0046982
Lan9g1501 185 ProSitePatterns NF-YB/HAP3 subunit signature. 59 75 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lan9g1501 185 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 151 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lan9g1501 185 MobiDBLite consensus disorder prediction 1 21 - -
Lan9g1501 185 PRINTS CCAAT-binding transcription factor subunit A signature 56 74 - -
Lan9g1501 185 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Lan9g1501 185 PRINTS CCAAT-binding transcription factor subunit A signature 94 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1501 Lan-Chr9 21611150 21612327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1501 1 122 CCAAT-HAP3 Transcription Factor Family AT4G14540 87.705 8.18e-75 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lan9g1501 CBFD_NFYB_HMF 1.6e-27 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g1501 9 21611150 21612327 Lan9g1501 9 21611150 21612327 PCT