LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan9g1499	ATGGCCAACAATAGTGCAGATGAGCCTTTACTATTGGTATCACCAGATCCTGCAGTGCCAAAGGCTAAAAGGCAGTTAAACAAGAGAAGGTTCCTCCGTTCTAGAAGTGCGCCCTGTGCTCCCGAACTTGTTCCTCCAGAGACAAATGACAATGTAGTATCAATTACAAATTCTAAGTCCATATTTGGGAAGTTACATCCAAGCTTTAAAAAAGTGGCTACATGCCTCACATTGTACATAGGTGTAGGAGCTGTAATTTTCTACCTTGTACGAAACCAGATAAAGGGGACGAAAACGGATGGAGTTCTTGATGCTATATACTTTACAATTGTGACAATGACCACAGTTGGATATGGAGACCTTGTGCCTAACAGTGACCTTACAAAACTACTTGCTTGTGCTTTTGTCTTCTCCGGTATGGCAGTGGTTGGACTAATCCTAAGCAAAGCAGCAGATTACTTGGTTGAGAAACAGGAAATTTTGCTTGTTAAAGCTATGCACATGCGCCGGAAAGTTGGTCCAATAGAAATTCTAAAGGAGGTTGAGGTCAATAAAACAAGATACAAATTTGTTATGGTCTTTTTACTTCTTGTGCTTCTCATCATTGCAGGGACAATTTTTCTGGTCAATGTTGAGAAATTGGAAATGATTGATGCCTTCTACTGTGTTTGTTCTACACTAACAACCCTGGGTTATGGAGATAAAAGTTTCTCAACTCAACCGGGAAGAATATTTGCCGTGTTTTGGATATTGACAGGTACTTTAACTTTAGCTCAGGTTTTCTTCTACCTTGCTGAGCTAAACACTGAAAGAAGACAAAAGGAACTTGCCAATTGGGTTCTTACAAAGAAGATGACCAATTTGGATTTGGAGGCAGCAGATCTTGATGATGATGGAAGTGTTGGGGCTGCTGAGTTTGTTATATATAAGCTGAAAGAGATGGGGAAGATTAGTGAAGAAGATATATTACGTGTGATGCAAGAATTTGAACACCTTGATGTTGACCAATCTGGTACCCTCTCAATTTCTGATATAAATCTTGCTCACCCATCTTAG	1056	0.3987	MANNSADEPLLLVSPDPAVPKAKRQLNKRRFLRSRSAPCAPELVPPETNDNVVSITNSKSIFGKLHPSFKKVATCLTLYIGVGAVIFYLVRNQIKGTKTDGVLDAIYFTIVTMTTVGYGDLVPNSDLTKLLACAFVFSGMAVVGLILSKAADYLVEKQEILLVKAMHMRRKVGPIEILKEVEVNKTRYKFVMVFLLLVLLIIAGTIFLVNVEKLEMIDAFYCVCSTLTTLGYGDKSFSTQPGRIFAVFWILTGTLTLAQVFFYLAELNTERRQKELANWVLTKKMTNLDLEAADLDDDGSVGAAEFVIYKLKEMGKISEEDILRVMQEFEHLDVDQSGTLSISDINLAHPS*	352

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan9g1499	351	Gene3D	-	194	255	-	-
	Lan9g1499	351	PANTHER	OUTWARD RECTIFYING POTASSIUM CHANNEL PROTEIN	19	343	-	-
	Lan9g1499	351	SUPERFAMILY	Voltage-gated potassium channels	183	284	-	-
	Lan9g1499	351	PRINTS	Two pore domain K+ channel signature	111	139	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Lan9g1499	351	PRINTS	Two pore domain K+ channel signature	228	237	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Lan9g1499	351	Gene3D	-	66	160	-	-
	Lan9g1499	351	PANTHER	POTASSIUM CHANNEL, SUBFAMILY K	19	343	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Lan9g1499	351	ProSitePatterns	EF-hand calcium-binding domain.	333	345	IPR018247	-
	Lan9g1499	351	Gene3D	-	256	348	-	-
	Lan9g1499	351	SUPERFAMILY	EF-hand	253	345	IPR011992	-
	Lan9g1499	351	Pfam	Ion channel	75	155	IPR013099	-
	Lan9g1499	351	Pfam	Ion channel	196	267	IPR013099	-
	Lan9g1499	351	SUPERFAMILY	Voltage-gated potassium channels	71	169	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan9g1499	Lan-Chr9	21597970	21600469	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan9g1499	61	351	Ion Channels	AT5G55630	64.605	8.99e-139	397

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan9g1499	K05389		-	gmx:100800137	497.278