Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1483 ATGAGGAAGAGAGCGGTGGCGGCTACGGCGGCGATGGAAATGGTACATCCTGTGGAGCCACGTTACCGTGGCGTGAGAAAGAGACCGTGGGGGAGATTTGCAGCGGAGATCAGAGATCCAATGAAGAAATCAAGGGTATGGCTTGGAACATTCGATTCCGCTGAAGAAGCAGCGCGTGCATACGACGCGGCTGCTGTAACCCTTCGTGGTCCAAAAGCCAAAACCAACTTCCCTATTAACCCTTCACCCTTTTATCACCACCACGCCACCGATCCCTACTTCGACCACCACCGTTACTACGCCACCGCCAACAACGGTGCTGGGTTTAATGACCATGTTGTTATTAACCCTCAGAGACCGACCTGTAGCGGTATGAGCAGCAACGTTGAGTCCTTCAGCGGCCCTCGTCATTCATCCGCCGTGGCTGCGCCTCCGGCGACGGTGGCGACACGAAGGTATCCTCGTACTCCGCCGTTAGTGCCTGAAGATTGCCACAGTGACTGCGACTCGTCGTCGTCGGTTGTTGATGATGGAGACGACATCGCTTCGTCGTCGTTTAAAGTGCCGTTACCGTTTGATCTTAATGTGATGCCGTTAGATGTTGATGATGATCTTCACTGCACCGCTCTTTGTCTCTGA 639 0.5399 MRKRAVAATAAMEMVHPVEPRYRGVRKRPWGRFAAEIRDPMKKSRVWLGTFDSAEEAARAYDAAAVTLRGPKAKTNFPINPSPFYHHHATDPYFDHHRYYATANNGAGFNDHVVINPQRPTCSGMSSNVESFSGPRHSSAVAAPPATVATRRYPRTPPLVPEDCHSDCDSSSSVVDDGDDIASSSFKVPLPFDLNVMPLDVDDDLHCTALCL* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1483 212 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 13 197 - -
Lan9g1483 212 MobiDBLite consensus disorder prediction 125 145 - -
Lan9g1483 212 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
Lan9g1483 212 SUPERFAMILY DNA-binding domain 21 79 IPR016177 GO:0003677
Lan9g1483 212 CDD AP2 20 80 IPR001471 GO:0003700|GO:0006355
Lan9g1483 212 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Lan9g1483 212 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Lan9g1483 212 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Lan9g1483 212 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Lan9g1483 212 Pfam AP2 domain 20 70 IPR001471 GO:0003700|GO:0006355
Lan9g1483 212 PANTHER ETHYLENE RESPONSE FACTOR 13 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1483 Lan-Chr9 21509897 21510998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1483 19 212 AP2-EREBP Transcription Factor Family AT3G20310 58.222 7.77e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan9g1483 AP2 3.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1483 K09286 - gmx:100820249 229.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1328 2 24080928 24082061 Lan9g1483 9 21509897 21510998 LSH
Lan11g0068 11 399890 400920 Lan9g1483 9 21509897 21510998 LSH
Lan2g1328 2 24080928 24082061 Lan9g1483 9 21509897 21510998 PCT
Lan9g1483 9 21509897 21510998 Lan2g1328 2 24080928 24082061 PCT
Lan9g1483 9 21509897 21510998 Lan11g0068 11 399890 400920 PCT
Lan9g1483 9 21509897 21510998 Lan9g1483 9 21509897 21510998 PCT
Lan11g0068 11 399890 400920 Lan9g1483 9 21509897 21510998 PCT