Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1469 ATGGCTATTATCAACACTTCTCCAACTATGACCAAGTGGTTTTCTACAGTGATAGAAGCAGTAACAAGATGTAAGGAAGGTTTTTCTTCATCAGTTTTGGCTGCCATTTCTAGTTCTGCAGTTGAACTATTCATGATGGTCTTGGAAAGAGTTCTTTTTGCTGCATTTACTTGCACTCTGGCACTTGGAGGGTCAATAATAGGAACAATTGCAGGAGCCATCAGAGGCCAAACTACAGAAGCTGGTTTTCTTGATGGTGCTGGAAAAGGAGCAGTAACAGGAGCCATTGCAGCTATAGAACTAGTTAATTTTGCTGCTGCTGGTGAACCATTATCAGAGGTTACTATGTTAAGCACTTTCTTGAATGGTGAAGTGTTTATAGAATGGATATGTCCAGCAGCTGCACGTGCCTATGAGTTGCATATTAACACAGCAGAAACAAGTTATAGAGAAGTATCAGATATTTATGATATTTCAGGAGTGAAAGGGATGCCACAGAGTTCTATTCTAAAGCTTCCTTTTCAGCAATTCAAGTCATGCAAAATGATGAAATTGAACAATAAGTTAAGCTGCTCAATTTGCTTACAGGATTATGAGGATGGAGAGTTGGTAAGGAAACTTCCAAAATGTGGCCATCTTTTTCATTTAGAATGCATAGACAAGTGGTTAATCCAACAAGGATCATGCCCAATGTGTAGAACTTATGTTCCTCATCAGATTCATGAATAG 729 0.3882 MAIINTSPTMTKWFSTVIEAVTRCKEGFSSSVLAAISSSAVELFMMVLERVLFAAFTCTLALGGSIIGTIAGAIRGQTTEAGFLDGAGKGAVTGAIAAIELVNFAAAGEPLSEVTMLSTFLNGEVFIEWICPAAARAYELHINTAETSYREVSDIYDISGVKGMPQSSILKLPFQQFKSCKMMKLNNKLSCSICLQDYEDGELVRKLPKCGHLFHLECIDKWLIQQGSCPMCRTYVPHQIHE* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1469 242 SMART ring_2 191 232 IPR001841 -
Lan9g1469 242 SUPERFAMILY RING/U-box 184 239 - -
Lan9g1469 242 CDD RING-H2_PA-TM-RING 191 233 - -
Lan9g1469 242 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 16 236 IPR044523 -
Lan9g1469 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 239 IPR013083 -
Lan9g1469 242 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 16 236 - -
Lan9g1469 242 Pfam Ring finger domain 190 233 IPR001841 -
Lan9g1469 242 ProSiteProfiles Zinc finger RING-type profile. 191 233 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1469 Lan-Chr9 21416365 21418447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1469 31 236 C3H Transcription Factor Family AT5G66070 34.884 1.60e-40 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1469 - K19041 gmx:100305612 302.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1307 2 23956137 23958703 Lan9g1469 9 21416365 21418447 LSH