Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1449 ATGATCACAAAGTACTTGAGTGATTTAATGGACAAACATTCTGAGGATTCTATGCCAGATCATGGTGCCAAAGGTTCGTCTGAGATTTTCTCACTTAATGTTGCCAAAAAAGTTGGAAGCAGTGCATGGGGGGTACCAAGTAGTGCTGATGCATTTCATGCTTCAAGTGACATTAGCTTGTTTTCTAGTTCGCTTCCTGTTCTTCCACATAAAAAGTTGAATTTTACTGATTCTGAGCATTATGGTCAATCTGCTGATGATAACTTCCCAATATTAGACAAAGTTCACAATGAGGATGAAGGACAAGATCCACTTGAAGACATTACAACGAATGCAATAGGAAACATGCTTCCCGATGATGAAGATGAGCTATTAGCTGGGATAATGGATGATTTTGACCTGAGCAGGTTGCCCAACCAGCTGGAGGATCTGGATGACAATGATCTTTTTGGCAGCGGAGGCGGGTTAGAAATGGATTTTGAACAACAAGAGGGTATTAGCATCGGTATTTCAAGGATAAGCTTATCTGATGGAGTCCCTTCAAATGGTTTTGGTCATTTTGCAATCCCAAATGGCATAGGAGCGGTAGCTGGGGAGCATCCTTATGGAGAGCATCCATCAAGGACATTATTTGTGAGGAATATCAATAGTAACGTGGAGGACTCTGAATTAATATCACTATTTGAGCAATATGGAGACATCAGAACATTGTACACTGCATGCAAGCATAGAGGCTTTGTGATGATTTCCTACTATGATATTCGAGCTGCTCGCACTGCAATGCGTGCTTTACAAAACAAGCCCTTGAGACGAAGAAAGCTTGATATTCATTTTTCAATTCCTAAGGATAACCCCTCAGAAAAGGATATTAATCAAGGAACCCTTGTAGTGTTCAATTTGGATCCATCAGTAGCAAATGATGACCTTCGTCAAATATTTGGAGCTTATGGGGAGGTCAAAGAGATCAGGGAAACGCCTCATAAGAGGCATCATAAATTTATTGAATTTTATGATGTTAGAGCAGCAGATGCTGCTCTTAAAGCATTAAATCGAATTGACATTGCAGGGAAACGCATCAAACTTGAACCCAGTCGCCCTGGTGGAGCACGTCGAAACTTGATGCAACAAATGACTGAGCTGGAGCAAGACGAAACTCGAACTTTTAGACATCAAGTGGGTTCACCTATTGCCAATTCTCCGCCTGGTAACTGGGCACACTTTGGGAGTCCAGTTGAACATAATCCATTAGGTTCTTTTAGCAAATCTCCCAGTTTGAGTTATGGCAGCCCTATGAATACCAGCCATTTGCCTGGATTAGGAGCAATTCTTTCTCCACATGCGTCAACATCTCCAAAGATTGCACCAATTGGCAAGGACCCTGGCAGGGCTAATAATGCAAATCAGATATTTGCAAGCTCTGGATCTTCACAAGGAGCGGCTTTTCAGCATTCTATGTCCTTTCCAGAGCATAAAGTAAATTCTAGCCCTAGGCCTATATCTACTTTTGGTGAATCAAAATCAAGTTCTTCAAGTGTTGGAACACTGTCTGGTCCTCAATTTCTGTGGGGAAGTCCAACTCCTTACTCGGAGCATTCAAACACATCTGCCTGGTCTTCAACTTCTGGAGGGCTTCCATTTACTTCTAGTGGACAAAGGCAGGGTTTTCCATATACTAGTCGGCACAACTCATTTCTTAACTCTCACCCACATCATCACGTGGGATCTGCTCCATCCGGCCTTCCTTCTGAGAGGCATTTTAGCTACTTTCCAGAGTCACCTGAAACTTCTGTCAAGAGTTCAGTTGCATATGGAAGTTTGAATCGCAACGATGGGGATTTTTTTATGAACATGGGTGCTCGTGGATCCGTAGGAGTTGGTATTGGCCTTACAGGAAATATGACTGAAATTAGTTCACCTAATTTCAGAATGATGTCACTGCCTTTGCATGGTTCCTTGTTCCTTGGAAATGGCATGTATTCTGGACCAGGAGCAACAAACACTGAGGGATTGGCTGAACGAGGTCGAAGTAAGCGACCTGACAATAGTGGGAACCAGATTGATAGCAAGAAGCATTACCAGCTTGATGTGGACAAAATTATGACGGGAGAAGACACAAGGACAACATTAATGATTAAAAACATTCCTAACAAGTACACTTCAAATCTGCTGCTTGCTGCTATTGATGAGAATCACAAGGGTAGTTATGACTTCCTCTACTTACCAATTGACTTTAAGAACAAGTGCAATGTGGGTTATGCTTTCATCAACATGGTGTCTCCTTCACACATCATCCCCTTCTATAAGGCATTTAATGGGAAGAAATGGGAGAAGTTTAATAGCGAGAAAGTTGCTTCACTGGCATATGCACGTATCCAAGGAAAGGGTGCCCTTGTGACACATTTTCAGAATTCAAGCCTAATGAACGAGGATAAGCGGTGCCGGCCAATTCTCTTTCATTCAGAGGGCAAAGAGACCGGTGACCAGGAACATTTCCTCTCAAGCAATTTGAATATATGCATTCGTCAGCCAGATGGTTCATACTCAGATGGTTTGTTGGAGAGTCGAAAGGGCAATTCGAATGAAAAGCTTGAGGAAGATTGA 2601 0.4237 MITKYLSDLMDKHSEDSMPDHGAKGSSEIFSLNVAKKVGSSAWGVPSSADAFHASSDISLFSSSLPVLPHKKLNFTDSEHYGQSADDNFPILDKVHNEDEGQDPLEDITTNAIGNMLPDDEDELLAGIMDDFDLSRLPNQLEDLDDNDLFGSGGGLEMDFEQQEGISIGISRISLSDGVPSNGFGHFAIPNGIGAVAGEHPYGEHPSRTLFVRNINSNVEDSELISLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVANDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAADAALKALNRIDIAGKRIKLEPSRPGGARRNLMQQMTELEQDETRTFRHQVGSPIANSPPGNWAHFGSPVEHNPLGSFSKSPSLSYGSPMNTSHLPGLGAILSPHASTSPKIAPIGKDPGRANNANQIFASSGSSQGAAFQHSMSFPEHKVNSSPRPISTFGESKSSSSSVGTLSGPQFLWGSPTPYSEHSNTSAWSSTSGGLPFTSSGQRQGFPYTSRHNSFLNSHPHHHVGSAPSGLPSERHFSYFPESPETSVKSSVAYGSLNRNDGDFFMNMGARGSVGVGIGLTGNMTEISSPNFRMMSLPLHGSLFLGNGMYSGPGATNTEGLAERGRSKRPDNSGNQIDSKKHYQLDVDKIMTGEDTRTTLMIKNIPNKYTSNLLLAAIDENHKGSYDFLYLPIDFKNKCNVGYAFINMVSPSHIIPFYKAFNGKKWEKFNSEKVASLAYARIQGKGALVTHFQNSSLMNEDKRCRPILFHSEGKETGDQEHFLSSNLNICIRQPDGSYSDGLLESRKGNSNEKLEED* 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1449 866 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 293 366 IPR000504 GO:0003723
Lan9g1449 866 PANTHER PROTEIN MEI2-LIKE 2 18 861 - -
Lan9g1449 866 Gene3D - 292 390 IPR012677 -
Lan9g1449 866 MobiDBLite consensus disorder prediction 531 592 - -
Lan9g1449 866 MobiDBLite consensus disorder prediction 664 688 - -
Lan9g1449 866 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 281 IPR000504 GO:0003723
Lan9g1449 866 CDD RRM3_MEI2_like 709 794 IPR034454 -
Lan9g1449 866 MobiDBLite consensus disorder prediction 487 514 - -
Lan9g1449 866 CDD RRM1_MEI2_like 207 283 IPR034453 -
Lan9g1449 866 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 295 360 IPR000504 GO:0003723
Lan9g1449 866 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 274 IPR000504 GO:0003723
Lan9g1449 866 SUPERFAMILY RNA-binding domain, RBD 708 792 IPR035979 GO:0003676
Lan9g1449 866 PANTHER RNA RECOGNITION MOTIF-CONTAINING 18 861 - -
Lan9g1449 866 SUPERFAMILY RNA-binding domain, RBD 205 368 IPR035979 GO:0003676
Lan9g1449 866 SMART rrm1_1 708 784 IPR000504 GO:0003723
Lan9g1449 866 SMART rrm1_1 209 277 IPR000504 GO:0003723
Lan9g1449 866 SMART rrm1_1 294 362 IPR000504 GO:0003723
Lan9g1449 866 MobiDBLite consensus disorder prediction 671 688 - -
Lan9g1449 866 MobiDBLite consensus disorder prediction 531 564 - -
Lan9g1449 866 Gene3D - 197 291 IPR012677 -
Lan9g1449 866 Pfam RNA recognition motif 2 706 802 IPR007201 -
Lan9g1449 866 CDD RRM2_MEI2_like 292 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1449 Lan-Chr9 21305496 21311152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1449 205 359 Eukaryotic Initiation Factors Gene Family AT1G71770 26.220 3.64e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1449 - - gmx:100812324 1404.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1274 2 23712824 23719603 Lan9g1449 9 21305496 21311152 LSH