Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1434 ATGACTTCTACTATCCTCAGAAGAACCCCTTCAATCCTCACCAACCGCGCTTTCATTTCCTTAACCTCCATTTCAACCCAACCCCTTCTCCATCGCATCACCAATTCCTCCACCGCCGCCACCGCCGCCGCAACAACATCCGGCGGCGACCCTTTGCAATTCTCAGGCCTATTCGAGTCCAAAGCGCGTGCCTTTCACTCGAATTCGTTCCCCTTGAGTTTCCACGCTACTTCGGTTTCTCGAGCTGAATATGCGGTAGATGATTACCCATTGGAAGAGGCATCCAAAGGGAACAACGCTGATGAAGGCCTTGAAGTTGCAAAGTTAGGGATTTCTCAGGAGATTGTATCTGCTCTCGCCAAAAAAGGCATCACCAAGCTTTTCCCCATTCAGAGGGCTGTGCTGGAACCTGCTATGCAAGGTCGTGATATGATCGGTCGTGCTAGAACTGGAACTGGGAAAACTCTTGCATTTGGGATACCCATCATGGATAAGATCATTCAGTTTAATGCTAAGCATGGACGAGGAAGGGCTCCTTTAGCTTTGGTTTTGGCTCCAACCAGAGAGTTGGCACGGCAGGTTGAAAATGAGTTCTCTGATGCGGCACCTAACTTGGACACAATTTGTGTTTATGGGGGTACACCTATCTCTCAACAAATGAGGCAGCTTGATTATGGTGTTGATATTGCAGTTGGTACGCCTGGTCGAATTATTGACCTTCTCAACAGAGGTGCCCTAGATCTAAAGGAAGTTCAGTTTATGGTTATTGATGAAGCTGATCAGATGCTCCAAGTAGGCTTTCAGGATGACGTGGAGAAGATCTTGGAGCGGTTGCCCGCAAATCGTCAGACTCTTATGTTCTCTGCAACAATGCCATCCTGGATAAAGGAGATTACACGCAATTACCTAAAAAATCCCCTCACCATTGATCTTGTTGGAGATTCTGATCAGAAGTTGGCAGATGGAATTACGTTGTACTCAATTGCAACTGATTCATATGTTAAAGCGGGAACTCTTGGACCACTAGTGAAAGAACATGCGAAAGGAGGAAAGTGTATTGTTTTCACTCAAACCAAACGTGATGCTGATCGATTATCATATGCCATGGCAAAAACTCTTCAATGTGAGGCCTTGCATGGAGATATATCACAAGCTCAGAGGGAAAGAACTCTCGCTGGCTTCAGAAGTGGTCATTTTAATGTTTTAGTGGCAACTGATGTTGCTTCACGTGGGCTTGATATACCAAATGTTGATCTCGTAATACATTATGATCTTCCCAATTCTTCAGAGATATTTGTTCACCGATCAGGAAGAACAGGTCGTGCTGGTAAGAAAGGAACTGCTATTCTTGTTTATACAGAAGATCAAACCAGGGCTGTTAGGTCTATTGAACGTGATGTAGGCTGTAGATTTACAGAGCTACCAAAGATTTCTGCTGCGCCTGGGTCAGTGGACACTTTTGGTGGCATGGGTGGCGGGCGATTTGGTTCTTATGGAGGTTCAAGGGACCGTCGATCTGGTGATTCAGGTTTTGGCCGTACTGGGGGCTACGGCAACTCTGGATCTGGCCGCTCTAGCTATGGAAATTCTGGTGGATCAAGTCGTTTTGGTGCATCTGATGAAAGGAATAGATTTGGTGGTCAAAGCTCTGGTCGTTATGGCTCCTCTGGTGGCTTTGGATCAGGTCAATCAGGAAGCACACAATCTGGTGGTTTTGGGGGATCTCGTAGTTCAGATCGTTCTGGTGGTTTTGGAGATTTTGGCTCAGGTGCATTCGGTGGTTCCCGTGGTGGTAGTGATCGGAACAACAGGGGAAGTCCATTCTAA 1827 0.4658 MTSTILRRTPSILTNRAFISLTSISTQPLLHRITNSSTAATAAATTSGGDPLQFSGLFESKARAFHSNSFPLSFHATSVSRAEYAVDDYPLEEASKGNNADEGLEVAKLGISQEIVSALAKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKIIQFNAKHGRGRAPLALVLAPTRELARQVENEFSDAAPNLDTICVYGGTPISQQMRQLDYGVDIAVGTPGRIIDLLNRGALDLKEVQFMVIDEADQMLQVGFQDDVEKILERLPANRQTLMFSATMPSWIKEITRNYLKNPLTIDLVGDSDQKLADGITLYSIATDSYVKAGTLGPLVKEHAKGGKCIVFTQTKRDADRLSYAMAKTLQCEALHGDISQAQRERTLAGFRSGHFNVLVATDVASRGLDIPNVDLVIHYDLPNSSEIFVHRSGRTGRAGKKGTAILVYTEDQTRAVRSIERDVGCRFTELPKISAAPGSVDTFGGMGGGRFGSYGGSRDRRSGDSGFGRTGGYGNSGSGRSSYGNSGGSSRFGASDERNRFGGQSSGRYGSSGGFGSGQSGSTQSGGFGGSRSSDRSGGFGDFGSGAFGGSRGGSDRNNRGSPF* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1434 608 Pfam Helicase conserved C-terminal domain 342 443 IPR001650 -
Lan9g1434 608 Gene3D - 335 485 IPR027417 -
Lan9g1434 608 CDD DEADc 115 310 - -
Lan9g1434 608 MobiDBLite consensus disorder prediction 495 608 - -
Lan9g1434 608 Pfam DEAD/DEAH box helicase 128 297 IPR011545 GO:0003676|GO:0005524
Lan9g1434 608 MobiDBLite consensus disorder prediction 513 576 - -
Lan9g1434 608 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 53 523 - -
Lan9g1434 608 SMART helicmild6 363 443 IPR001650 -
Lan9g1434 608 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 135 309 IPR014001 -
Lan9g1434 608 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 104 132 IPR014014 GO:0003724
Lan9g1434 608 CDD SF2_C_DEAD 323 452 - -
Lan9g1434 608 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 53-LIKE 53 523 - -
Lan9g1434 608 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 338 482 IPR001650 -
Lan9g1434 608 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 464 IPR027417 -
Lan9g1434 608 Gene3D - 105 313 IPR027417 -
Lan9g1434 608 SMART ultradead3 123 326 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1434 Lan-Chr9 21204251 21208705 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1434 109 475 Eukaryotic Initiation Factors Gene Family AT3G19760 33.693 1.43e-68 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1434 - - ahf:112702088 760.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1251 2 23569043 23573454 Lan9g1434 9 21204251 21208705 PCT
Lan9g1434 9 21204251 21208705 Lan2g1251 2 23569043 23573454 PCT