Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1428 ATGTCACGTGGTGATAGAATGACTTCGGATCTTAACAGAACTGGTACTGTTGAAAGAGACATTGAGCAGGCCATTACTGCTTTAAAGAAAGGGGCTTACTTGCTCAAGTATGGAAGAAGGGGAAAGCCCAAATTTTGCCCCTTTCGTCTTTCAAATGATGAATCTGTTTTGATATGGTTCTCAGGGAAAGAAGAGAAGCATCTCAAACTGAGCCATGTGTCTAGAATTATCTCTGGACAACGCACGCCTATCTTTCAAAGATATCCGCGACCTGAGAAGGAATACCAGTCTTTTTCTCTTATCTACAATGATAGGTCACTGGACATGATTTGTAAGGATAAAGATGAAGCTGAAGTTTGGTTCAGTGGTTTGAAAGCATTAATTTCCCGTAGCCATCATCGAAAGTGGAGAACTGATTCAAGAAGCGATGGCGTTCCATCTGAAGCTAATAGTCCTCGGACATACACAAGAAGAAGTTCACCTTTAAATTCTCCATTTGATAGTAATGAAAGCTTGCAAAAGGATAGTGGGGATCACCTTCGCCTTCATAGCCCATATGAGAGCCCCCCAAAGAATGGGTTGGACAAAGCATTTTCTGATGTGGTTCTGTATGCTGTTCCTCCAAAGGTTTTCTTCCCTCCAGAGTCTGCCAGTGGCTCAGTCCACTCTGTATCATCCGGAGGATCAGATAGTACATATGGTCACATGAAGTCAATGGGTATGGATGCTTTTAGAGTTAGTCTATCAAGTGCTGTTAGCTCATCTAGCCAAGGTTCTGGTCATGATGATGGTGACGCCTTAGGTGATGTTTTCATTTGGGGGGAAGGCACAGGTGATGGTGTTTTAGGTGGTGGGACTCACCGAGTTGGGAGTTGTTTGGGAGCAAAAATGGATTCACTATTTCCCAAGGCATTGGAATCTGCAGTAGTTCTTGATGTACAGAACATTGCTTGTGGTGGACAACATGCAGCCTTAGTGACCAAACAAGGTGAAATTTTCTCATGGGGGGAGGAATCAGGAGGCAGGCTTGGGCACGGTGTTGACTCTGATGTTCTTCACCCAAAGCTCATAGAATCTCTATGTAATACAAATATCGAACTTGTAGCTTGTGGGGAGTATCATACGTGTGCTGTGACACTCTCTGGTGATCTCTATACATGGGGTGATGGCACGTACAATTATGGTCTTCTGGGCCATGGAAATCAAGTGAGCCACTGTGTCCCTAAAAGAGTAAATGGACCCTTGGAGGGCATACATGTTTCATCTATTTCTTGTGGACCATGGCATACTGCTGTCGTAACCTCTGCTGGGCAATTATTTACTTTTGGTGATGGTACATTTGGTGTTCTGGGTCATGGAGACCGAAAAAATGTGTCGTTACCAAGGGAAGTTGAGTCCCTTAAAGGACTTCGTACTGTACGGGCTGCTTGTGGGGTTTGGCATACTGCTGCAGTTGTTGAAGTCATGGTTGGAAATTCAAGTTCCAGCAACTGCTCTTCAGGGAAGCTGTTTACTTGGGGTGATGGAGACAAAGGTCGACTTGGACATGGTGATAAGGAAGCAAAACTTGTTCCAACCTGTGTTGCGGCCCTTGTTGAACCCAATTTTTGTCAAGTTGCTTGTGGAGAAAGTATGACTGTTGCACTAACGACTTCAGGCCATGTCTATACAATGGGCAGTCCTGTTTATGGCCAGTTGGGAAATCCTCAAGCCGATGGGAAGCTACCAACCTGTGTTGAAGGAAAGCTTTCGAAGAGTTTTATGGAGGAGATAGCTTGTGGTGCTTATCATGTTGCAGCTTTAACATCAAGGACTGAAGTTTACACTTGGGGGAAGGGTGCCAATGGCCGTTTAGGCCATGGTGACACAGATGATAAAAATGTCCCAACATTAGTAGAAGCTCTGAAAGACAAACAAGTCAAAAGTATTGCTTGTGGTACTAATTTCACTGCGGCTATCTGTCTGCATAAGTGGGTATCTGGTGTTGACCAGTCCATGTGTTCTGGCTGTCGTCTTCCATTTAATTTCAAAAGAAAACGTCACAACTGTTACAATTGTGGGCTTGTGTTTTGCCATTCATGTAGCAGCAAGAAGTGTCTTAAGGCTTCAATGGCACCAAACCCCAACAAACCTTATCGTGTCTGTGATAATTGTTTTAATAAACTAAGGAAAGCTATAGAATCTGATCCTTCATCTCATTCTGCCGTGAGCAGAAGAGGAAGTATCAATCAAGGGTCACTTGAGTTAATTGATAAGGATGATAAATTGGATTCCAAATCTCGTAATCAACTTGCCAGATTTTCTTCAATGGAATCGTTTCAACAAGTGGAAAGCAAGTCCTCAAAGAAAAACAAGAAATTGGAATTCAACAGTAGCCGTGTCTCACCTGTTCCAAATGCGGGTTCACAATGGGGAGCACTGAATATTTCTAAATCTTTAAATCCTGTTTTTGGATCATCAAAGAAGTTCTTCTCAGCTTCTGTTCCTGGATCTAGAATTGTTTCCCGAGCAACATCCCCAATATCTAGACGGCCTAGTCCACCTCGTTCAACCACTCCAACTCCAACACTAGGAGGCCTTACTTCACCGAAGATAGTTGTCGATGATGCTAAGAAGACGAATGATAGCCTTAGTCAGGAGGTTATTAAATTAAGATCACAGGTGGAAAACCTGACTCGAAAAGCCCAACTTCAAGAAATTGAGTTGGAAAGAACAACTAAACAGCTAAAAGATGCCATAGCAATTGCCGGGGAGGAAACTGCCAAATGCAAAGCAGCAAAAGAAGTGATAAAGTCGCTTACTTCCCAGTTAAAGGACATGGCTGAGAGGCTACCTTTAGGAGCAGCTAGGAATATCAAATCACCTTCTTCTCTTGCTTCATTTGGTTCCTCTCTTGGTTCCAATGAAGTTAGCTATGCTTCCATGGAGCGGTTGAATATTCAAGCAACAAGCCCAGAAGCAGACTTAACTGGATTGAATAACCAACCACTTTCTAATGGATCAAGCACTATCAGTAACCGTAGTGTTGGTCACAATAAACAAAGCCAGTCAGATGCAACTAATAGAAATGGGAGCAGAATGAAGGATAGTGATTCCCGTAATGAGACAGAATGGGTTGAACAAGATGAATCTGGTGTATATATTACGCTCACCTCCCTACCAGGAGGTGTAATCGAGCTTAAGAGAGTTCGCTTCAGTCGGAAGCGGTTTAGTGAGAAGCAAGCTGAACAATGGTGGGCTGAGAATCGTGCAAGAGTATATGAGCAATATAATGTGCGCATGATTGACAAGTCCACTGTTGGCGTTGGGAGTGAAGACCTGGCTCATTGA 3330 0.4342 MSRGDRMTSDLNRTGTVERDIEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESVLIWFSGKEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDMICKDKDEAEVWFSGLKALISRSHHRKWRTDSRSDGVPSEANSPRTYTRRSSPLNSPFDSNESLQKDSGDHLRLHSPYESPPKNGLDKAFSDVVLYAVPPKVFFPPESASGSVHSVSSGGSDSTYGHMKSMGMDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGEGTGDGVLGGGTHRVGSCLGAKMDSLFPKALESAVVLDVQNIACGGQHAALVTKQGEIFSWGEESGGRLGHGVDSDVLHPKLIESLCNTNIELVACGEYHTCAVTLSGDLYTWGDGTYNYGLLGHGNQVSHCVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKNVSLPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCQVACGESMTVALTTSGHVYTMGSPVYGQLGNPQADGKLPTCVEGKLSKSFMEEIACGAYHVAALTSRTEVYTWGKGANGRLGHGDTDDKNVPTLVEALKDKQVKSIACGTNFTAAICLHKWVSGVDQSMCSGCRLPFNFKRKRHNCYNCGLVFCHSCSSKKCLKASMAPNPNKPYRVCDNCFNKLRKAIESDPSSHSAVSRRGSINQGSLELIDKDDKLDSKSRNQLARFSSMESFQQVESKSSKKNKKLEFNSSRVSPVPNAGSQWGALNISKSLNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLTSPKIVVDDAKKTNDSLSQEVIKLRSQVENLTRKAQLQEIELERTTKQLKDAIAIAGEETAKCKAAKEVIKSLTSQLKDMAERLPLGAARNIKSPSSLASFGSSLGSNEVSYASMERLNIQATSPEADLTGLNNQPLSNGSSTISNRSVGHNKQSQSDATNRNGSRMKDSDSRNETEWVEQDESGVYITLTSLPGGVIELKRVRFSRKRFSEKQAEQWWAENRARVYEQYNVRMIDKSTVGVGSEDLAH* 1110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1428 1109 SUPERFAMILY PH domain-like 20 128 - -
Lan9g1428 1109 MobiDBLite consensus disorder prediction 985 1023 - -
Lan9g1428 1109 PANTHER INACTIVE PHOSPHOLIPASE C-LIKE PROTEIN 2 21 1095 - -
Lan9g1428 1109 SMART fyve_4 655 724 IPR000306 GO:0046872
Lan9g1428 1109 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 268 329 IPR000408 -
Lan9g1428 1109 Gene3D - 220 487 IPR009091 -
Lan9g1428 1109 Pfam FYVE zinc finger 657 723 IPR000306 GO:0046872
Lan9g1428 1109 PRINTS Chromosome condensation regulator RCC1 signature 313 326 IPR000408 -
Lan9g1428 1109 PRINTS Chromosome condensation regulator RCC1 signature 332 348 IPR000408 -
Lan9g1428 1109 PRINTS Chromosome condensation regulator RCC1 signature 382 398 IPR000408 -
Lan9g1428 1109 PRINTS Chromosome condensation regulator RCC1 signature 423 439 IPR000408 -
Lan9g1428 1109 PRINTS Chromosome condensation regulator RCC1 signature 439 453 IPR000408 -
Lan9g1428 1109 PRINTS Chromosome condensation regulator RCC1 signature 542 560 IPR000408 -
Lan9g1428 1109 PRINTS Chromosome condensation regulator RCC1 signature 600 621 IPR000408 -
Lan9g1428 1109 MobiDBLite consensus disorder prediction 1024 1039 - -
Lan9g1428 1109 Coils Coil 923 943 - -
Lan9g1428 1109 Pfam Pleckstrin homology domain 22 128 IPR001849 -
Lan9g1428 1109 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 316 326 IPR000408 -
Lan9g1428 1109 Gene3D - 495 668 IPR009091 -
Lan9g1428 1109 MobiDBLite consensus disorder prediction 985 1039 - -
Lan9g1428 1109 MobiDBLite consensus disorder prediction 767 803 - -
Lan9g1428 1109 MobiDBLite consensus disorder prediction 835 864 - -
Lan9g1428 1109 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 382 436 IPR000408 -
Lan9g1428 1109 Pfam Transcription factor regulating root and shoot growth via Pin3 1035 1090 IPR013591 -
Lan9g1428 1109 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 661 723 IPR017455 -
Lan9g1428 1109 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 330 381 IPR000408 -
Lan9g1428 1109 Gene3D - 19 137 IPR011993 -
Lan9g1428 1109 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 21 1095 - -
Lan9g1428 1109 CDD FYVE_like_SF 666 719 - -
Lan9g1428 1109 CDD PH_PLC_plant-like 19 129 - -
Lan9g1428 1109 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 501 552 IPR000408 -
Lan9g1428 1109 MobiDBLite consensus disorder prediction 143 171 - -
Lan9g1428 1109 SUPERFAMILY FYVE/PHD zinc finger 657 727 IPR011011 -
Lan9g1428 1109 ProSiteProfiles BRX domain profile. 1036 1091 IPR013591 -
Lan9g1428 1109 Pfam Unstructured region between BRX_N and BRX domain 960 1029 - -
Lan9g1428 1109 Pfam Regulator of chromosome condensation (RCC1) repeat 552 601 IPR000408 -
Lan9g1428 1109 Pfam Regulator of chromosome condensation (RCC1) repeat 437 485 IPR000408 -
Lan9g1428 1109 Pfam Regulator of chromosome condensation (RCC1) repeat 381 433 IPR000408 -
Lan9g1428 1109 Pfam Regulator of chromosome condensation (RCC1) repeat 500 549 IPR000408 -
Lan9g1428 1109 Pfam Regulator of chromosome condensation (RCC1) repeat 330 378 IPR000408 -
Lan9g1428 1109 Pfam Regulator of chromosome condensation (RCC1) repeat 606 653 IPR000408 -
Lan9g1428 1109 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 423 433 IPR000408 -
Lan9g1428 1109 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 553 604 IPR000408 -
Lan9g1428 1109 SUPERFAMILY RCC1/BLIP-II 267 658 IPR009091 -
Lan9g1428 1109 MobiDBLite consensus disorder prediction 135 191 - -
Lan9g1428 1109 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 669 729 IPR013083 -
Lan9g1428 1109 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 437 488 IPR000408 -
Lan9g1428 1109 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 475 485 IPR000408 -
Lan9g1428 1109 Coils Coil 867 908 - -
Lan9g1428 1109 Pfam Transcription factor BRX N-terminal domain 918 951 IPR027988 -
Lan9g1428 1109 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 605 656 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1428 Lan-Chr9 21165589 21174680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1428 927 1100 Major Intrinsic Protein MIP AT1G31880 33.696 1.43e-15 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1428 - - gmx:100806439 1920.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1247 2 23516000 23523843 Lan9g1428 9 21165589 21174680 LSH
Lan11g0141 11 882789 891552 Lan9g1428 9 21165589 21174680 LSH