Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1427 ATGGAAGAATCAAGTGAATTGCAATCAGAAGAAAACAAAGTCTCTATGGAGAAAAATAAGAAAAGAAAGCTCAAAACACCGTCTCAGGTTGCAGGATTGGAGAAATTTTATCATGAGCACAAATATCCCACAGAAGAAATGAAGTCAGAACTTGCTAAAGAGTTAGGGTTGACAGAAAAGCAAGTATGTGGATGGTTTCGGCACAGAAGGTTAAAAGATAAAAGAATGTTGAAAGATGAATCAGTTGCTAATGGACGGCAAGATCGTTCGAGTGGTGTCATACAGGATCATGGCAGTGGACTTGGGCAAGATTCATGTGGAAGCAGTAAACATGGTGATTACAAGTATCTGGATCCCAAAGAGGTTGAGAGCCAAGTCCTACACAACAATGGTTTTTCGGCTGCGGATTTGGCCTATGGACATCGGAACCATTATACAGAAAATGTCCGTGGAATGGAGGACACTTCGTCTGAGAGTAGTTCATATTTGCAAGATAGATTGTTTCCTCAAGGCCAAGATCCATATGATATGGAGTCTTCTAGATACCTTACACCTAATAGAGCTCTTCCACCCCTAAATCCCAAGAGTGCAATTAACACGAGACACAAAGCATCAGGATATTTGAAAGTGAAGCGTGAGATAGAAAATGCCGCTGTAACTGCCCTTAAGAAGCAATTAGCAAGAAACTATCGAGAAGATGGTCCGCTACCTGGTGTAGAATTTGATCCACCTCCTCCAGGGGCATTTGAAGGCCAAAATTCAGATCCAGTTCGTGAACCATACAGTGTTTCAAATCCCGCTCTTCCAAATTCTTCAGATATCTCTCCCTTAAAAAGGCAATTCAGTCTTGGCTCTAGATATGATTGGTATAATACTAAGTTTAGTTCCCAAGATTCACATATGGAAGTTGACTTTAGCTCCTTGCATGGTGGCGCTTGTATCCAGGATAAACAGGATAAGAAAGCTCGGAAGAGTATAAAAAAAAGGCAAACTTTTTACAGTAATAATCATTTTCCCGGCAGGAACTCTTCCATGGATTTGTATGAAGACAATAATGGAGAAGCTTCTGCTTATAATAGCACTAAGAATCATAGAATAGGCACTATGCATGGTGTTGAGGGAATGGGATCTGATACTACTTCCATCCACGCCGACCACTATGAAGAGGACCTCGCGGTTAATCAGACAGACTTGCTGCAACATGGTTATGATAATCTCAATCTGAAGAATGTGCAAAGTAGTGGATATGCAAAATCTAAGGCTTCAAATTCAGTCCGCAATCCTCAAATTTCTGTCGATACTGAAGAAAGAGGGCATCCTACTAGGACGGCGAAGGAAGGGATGTTTAAGGGGGGCAGAAAGCCAAAAAAACAACATTGTGATGCAGATGGAGCAAAGATGCTTTCGAAAGAAATCGAGGATGCAAAGCAAACTAAAATTGACCCATTTCAGCAATACCATGTGAAACAAGCACCCGTCGCTGAGATTGACCAAAGGAAAATTCAGAGATCTGCTACACCGATACCATCTAGCTTTAGCGAGGACGAAACTGCTGACGCCAGTTCCTCGCTGGATTAA 1578 0.4163 MEESSELQSEENKVSMEKNKKRKLKTPSQVAGLEKFYHEHKYPTEEMKSELAKELGLTEKQVCGWFRHRRLKDKRMLKDESVANGRQDRSSGVIQDHGSGLGQDSCGSSKHGDYKYLDPKEVESQVLHNNGFSAADLAYGHRNHYTENVRGMEDTSSESSSYLQDRLFPQGQDPYDMESSRYLTPNRALPPLNPKSAINTRHKASGYLKVKREIENAAVTALKKQLARNYREDGPLPGVEFDPPPPGAFEGQNSDPVREPYSVSNPALPNSSDISPLKRQFSLGSRYDWYNTKFSSQDSHMEVDFSSLHGGACIQDKQDKKARKSIKKRQTFYSNNHFPGRNSSMDLYEDNNGEASAYNSTKNHRIGTMHGVEGMGSDTTSIHADHYEEDLAVNQTDLLQHGYDNLNLKNVQSSGYAKSKASNSVRNPQISVDTEERGHPTRTAKEGMFKGGRKPKKQHCDADGAKMLSKEIEDAKQTKIDPFQQYHVKQAPVAEIDQRKIQRSATPIPSSFSEDETADASSSLD* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1427 525 Gene3D - 8 92 - -
Lan9g1427 525 SUPERFAMILY Homeodomain-like 18 84 IPR009057 -
Lan9g1427 525 MobiDBLite consensus disorder prediction 229 274 - -
Lan9g1427 525 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 525 - -
Lan9g1427 525 MobiDBLite consensus disorder prediction 434 463 - -
Lan9g1427 525 MobiDBLite consensus disorder prediction 497 525 - -
Lan9g1427 525 MobiDBLite consensus disorder prediction 7 28 - -
Lan9g1427 525 MobiDBLite consensus disorder prediction 503 525 - -
Lan9g1427 525 MobiDBLite consensus disorder prediction 76 112 - -
Lan9g1427 525 MobiDBLite consensus disorder prediction 1 28 - -
Lan9g1427 525 MobiDBLite consensus disorder prediction 86 106 - -
Lan9g1427 525 CDD homeodomain 20 76 IPR001356 GO:0003677
Lan9g1427 525 Pfam Homeodomain 20 75 IPR001356 GO:0003677
Lan9g1427 525 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Lan9g1427 525 MobiDBLite consensus disorder prediction 257 274 - -
Lan9g1427 525 MobiDBLite consensus disorder prediction 152 167 - -
Lan9g1427 525 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 525 - -
Lan9g1427 525 MobiDBLite consensus disorder prediction 151 173 - -
Lan9g1427 525 SMART HOX_1 18 80 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1427 Lan-Chr9 21158633 21162892 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1427 3 525 Homeobox Transcription Factor Family AT4G03250 38.246 1.45e-75 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Lan9g1427 Homeodomain 2.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1427 - - gmx:100803515 729.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1246 2 23508385 23513171 Lan9g1427 9 21158633 21162892 LSH
Lan11g0142 11 893664 898951 Lan9g1427 9 21158633 21162892 LSH