Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1418 ATGGGCAATTGTTGCTTAGGTGCTAATGATAATGCTCCAGAAGACAAGGGAGAAACCAACCAACACCAACAAACCAAAAACATTAGCAACGAAAACGACTCGGCCACCACGCCACCATCATCATCATCGAAACCTTCTAAGCCATCAAAAACATCCCCTGTTGGCCCTGTTCTTGGAAGACCAATGGAGGATGTGAAATCCACCTACACCATTGGAAAGAAGCTAGGGAAAGGTCAATTTGGTGTTACATATTTGTGCACACATAAGGTCACTGGAAAACAATATGCATGCAAGACTATTGCCAAGAGGAAGCTTGTGAACAAAGAGGAGTTAGAGGATTGTAGGAGGGAGGTGCAAATCATGCATCACCTAATAGGCCAGCCTAATATTGTTGAACTTGTCGGTGCCTTCGAGGACAAGCAATCCGTGCATTTGGTTATGGAGTTGTGTGCTGGTGGTGAGCTCTTTGATCGTATCATCACGAAAGGACATTATACGGAGCGTGCTGCTGCTTCCTTGTTGAGAACTATTGTTCAGATTGTTCATACTTGCCATTCCATGGGTGTCATTCATAGGGATCTTAAGCCTGAGAATTTCCTCTTGTTGAACAAGGATGAAAATTCACCTCTTAAGGCAACTGATTTTGGTCTATCAGTTTTCTACAAGCAAGGAGAGGTGTTCAAAGACCTTGTTGGCAGTGCATATTACATTGCACCTGAGGTCTTGAAGAGGAAATATGGGCCAGAAGTTGACATATGGAGTGTTGGTGTAATACTATACATTCTTCTATGTGGTGTTCCTCCATTCTGGGCAGAATCCGAAACTGGGATATTCAACGCGATTCTACGAGGTCACATTGACTTCACCAGTGATCCATGGCCCTCCATTTCACCTCAGGCAAAAGATCTTGTTAGGAAAATGTTGAACATGGATCCCAAGCAGAGGCTGACAGCATATCAAGTCCTGAATCATCCATGGATCAAGGAGGATGGAGAAGCACCAGATACACCTCTTGACAATGCAGTGTTGAATAGGCTCAAACAATTCAGAGCAATGGATCAATTCAAGAAAGTAGCTCTGAAGGTCATTGCTGGGTGCCTATCAGAGGAAGAAATTATGGGATTGAAGCAGATGTTCAAGGGGATGGATACTGATAACAGTGGAACCATTACAATTGAAGAGCTCAAGCAAGGGCTTGCAAAACAAGGGACTAAGTTGACAGAACAAGAAGTTAAGCAATTAATGGAAGCTGCAGATGCTGATGGCAATGGAATCATAGATTACGATGAGTTCATCGCAGCCACAATGCACATGAACCGGATGAACAGAGCAGACCATGTTTATACTGCATTCCAATACTTTGATAAAGATAATAGCGGCTACATAACTATTGAAGAACTAGAGCAGGCTCTCCATGAATATAATATGCATGATGGTAGGGACATCAAGGAAATCATTGCAGAAGTTGATGCAGATAATGATGGGCGAATCAACTATGACGAGTTTGCAGCAATGATGACTAAAGGACACACAGAAGCAGTTCCTACCAAGAAAAGGCGTGATTCATTTATTTCATAA 1578 0.4278 MGNCCLGANDNAPEDKGETNQHQQTKNISNENDSATTPPSSSSKPSKPSKTSPVGPVLGRPMEDVKSTYTIGKKLGKGQFGVTYLCTHKVTGKQYACKTIAKRKLVNKEELEDCRREVQIMHHLIGQPNIVELVGAFEDKQSVHLVMELCAGGELFDRIITKGHYTERAAASLLRTIVQIVHTCHSMGVIHRDLKPENFLLLNKDENSPLKATDFGLSVFYKQGEVFKDLVGSAYYIAPEVLKRKYGPEVDIWSVGVILYILLCGVPPFWAESETGIFNAILRGHIDFTSDPWPSISPQAKDLVRKMLNMDPKQRLTAYQVLNHPWIKEDGEAPDTPLDNAVLNRLKQFRAMDQFKKVALKVIAGCLSEEEIMGLKQMFKGMDTDNSGTITIEELKQGLAKQGTKLTEQEVKQLMEAADADGNGIIDYDEFIAATMHMNRMNRADHVYTAFQYFDKDNSGYITIEELEQALHEYNMHDGRDIKEIIAEVDADNDGRINYDEFAAMMTKGHTEAVPTKKRRDSFIS* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1418 525 Pfam Protein kinase domain 69 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan9g1418 525 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Lan9g1418 525 Gene3D - 335 512 - -
Lan9g1418 525 SMART serkin_6 69 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan9g1418 525 PANTHER SERINE/THREONINE-PROTEIN KINASE 19 515 - -
Lan9g1418 525 SUPERFAMILY EF-hand 367 507 IPR011992 -
Lan9g1418 525 ProSitePatterns EF-hand calcium-binding domain. 490 502 IPR018247 -
Lan9g1418 525 MobiDBLite consensus disorder prediction 22 50 - -
Lan9g1418 525 ProSitePatterns Protein kinases ATP-binding region signature. 75 102 IPR017441 GO:0005524
Lan9g1418 525 SUPERFAMILY Protein kinase-like (PK-like) 43 353 IPR011009 -
Lan9g1418 525 CDD STKc_CAMK 69 326 - -
Lan9g1418 525 ProSiteProfiles EF-hand calcium-binding domain profile. 481 512 IPR002048 GO:0005509
Lan9g1418 525 ProSiteProfiles EF-hand calcium-binding domain profile. 442 477 IPR002048 GO:0005509
Lan9g1418 525 PANTHER CALMODULIN-DOMAIN KINASE CDPK PROTEIN 19 515 - -
Lan9g1418 525 SMART efh_1 410 438 IPR002048 GO:0005509
Lan9g1418 525 SMART efh_1 481 509 IPR002048 GO:0005509
Lan9g1418 525 SMART efh_1 374 402 IPR002048 GO:0005509
Lan9g1418 525 SMART efh_1 446 474 IPR002048 GO:0005509
Lan9g1418 525 Pfam EF-hand domain pair 375 435 IPR002048 GO:0005509
Lan9g1418 525 Pfam EF-hand domain pair 446 506 IPR002048 GO:0005509
Lan9g1418 525 ProSitePatterns EF-hand calcium-binding domain. 383 395 IPR018247 -
Lan9g1418 525 MobiDBLite consensus disorder prediction 1 61 - -
Lan9g1418 525 Gene3D Phosphorylase Kinase; domain 1 70 154 - -
Lan9g1418 525 Gene3D Transferase(Phosphotransferase) domain 1 155 334 - -
Lan9g1418 525 ProSitePatterns EF-hand calcium-binding domain. 455 467 IPR018247 -
Lan9g1418 525 ProSitePatterns EF-hand calcium-binding domain. 419 431 IPR018247 -
Lan9g1418 525 ProSiteProfiles EF-hand calcium-binding domain profile. 406 441 IPR002048 GO:0005509
Lan9g1418 525 ProSiteProfiles Protein kinase domain profile. 69 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan9g1418 525 ProSiteProfiles EF-hand calcium-binding domain profile. 370 405 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1418 Lan-Chr9 21061501 21069867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1418 1 523 EF-hand Containing Proteins AT5G12180 78.072 0.0 878
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lan9g1418 Pkinase 3.8e-77 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1418 K13412 - gmx:100819061 885.945
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1236 2 23424851 23427619 Lan9g1418 9 21061501 21069867 LSH
Lan11g0149 11 947889 951473 Lan9g1418 9 21061501 21069867 LSH