Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1416 ATGGCGGCGATAAGTCTCCGGAAGGGGAATACGCGGTTGCCGCCGGAGGTGAACAGAGTCCTCTACGTGAGGAACCTACCCTTCAACATCACCAGCGAAGAGATGTACGATATCTTCGGCAAATACGGTGCCATACGCCAGATCCGTATCGGCACCAACAAGGACACACGTGGCACCGCCTTCGTCGTCTACGAGGATATCTACGACGCCAAAACCGCCGTCGATCACCTCTCCGGTTTCAACGTCGCTAATCGCTACCTCATCGTTCTCTATTACCAGCAGGCTAAGATGAGTAAGAAGTTTGATCATAAGAAGAAGGAGGATGAGATCACTCGTATGCAAGAAAAATACGGTGTCTCCACTAAGGATAAGTAG 375 0.5093 MAAISLRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDHKKKEDEITRMQEKYGVSTKDK* 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1416 124 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 87 IPR000504 GO:0003723
Lan9g1416 124 SMART rrm1_1 20 90 IPR000504 GO:0003723
Lan9g1416 124 PANTHER SPLICING FACTOR 3B 5 116 - -
Lan9g1416 124 CDD RRM_SF3B14 17 93 IPR034150 -
Lan9g1416 124 SUPERFAMILY RNA-binding domain, RBD 7 101 IPR035979 GO:0003676
Lan9g1416 124 PANTHER SPLICING FACTOR 3B SUBUNIT 6 5 116 - -
Lan9g1416 124 Gene3D - 5 109 IPR012677 -
Lan9g1416 124 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 94 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1416 Lan-Chr9 21050491 21060659 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1416 21 113 Eukaryotic Initiation Factors Gene Family AT2G36660 31.579 1.76e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1416 K12833 - gmx:100802877 245.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0150 11 952089 952670 Lan9g1416 9 21050491 21060659 LSH