Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1410 ATGCATCATATAAATATAAATCCCAATAACAATTGCAAAGCCGCTTTCTCTCACTTCAGTACCCAAAAAGTAGAAATGGCTGCTACCTTCTCAGATCTACACACTGAGTCCGGTCTCAAATCCCTTGAAGAATTCCTTTCTGGCAAGACCTATATTTCTGGGGATGAATTGACAAAGGATGACATCAAAGTGTATGGTTCTGTTTTGGAGAAGCCATCAGAATCTTTTCCCCATGTTGCCACGTGGTACGAGGTTGTCTCTTCCCATCTTGCTCTAAGCTTCCCTGGGACTGCTCAAGGGGTGAAATTCAGTGGCAAATCTGCCCCAGTTGAAGCTGCACCGGCCAAAGCGGATGCTCCTGCAACAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAGACAGAGGAAGAGAAGAAGGCAGCTGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAAAAGAAAGAAAGTGGTAAGTCTTCTGTTCTGCTTGATGTGAAGCCTTGGGATGACGAGACCGACATGAAGAAGCTAGAAGAGACTGTTCGCAGCATTGAGTTGCCTGGTCTACTGTGGGGAGCATCGAAACTGGTTGCTGTTGGATACGGGATCAAGAAGCTGCAGATAATGATGACAATTGTTGATGACCTTGTATCTGTGGACACTCTCATTGAAGAACGTCTGACAGTTGAGCCAGCCAACGAGTACATCCAAAGCTGTGACATCGTTGCATTCAACAAAATCTAA 747 0.4538 MHHININPNNNCKAAFSHFSTQKVEMAATFSDLHTESGLKSLEEFLSGKTYISGDELTKDDIKVYGSVLEKPSESFPHVATWYEVVSSHLALSFPGTAQGVKFSGKSAPVEAAPAKADAPATEDDDDLDLFGDETEEEKKAAEEREAAKKPAKKKESGKSSVLLDVKPWDDETDMKKLEETVRSIELPGLLWGASKLVAVGYGIKKLQIMMTIVDDLVSVDTLIEERLTVEPANEYIQSCDIVAFNKI* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1410 248 Gene3D - 152 248 IPR014717 -
Lan9g1410 248 Gene3D - 6 94 - -
Lan9g1410 248 SMART EF1_GNE_2 159 248 IPR014038 GO:0003746|GO:0006414
Lan9g1410 248 Pfam EF-1 guanine nucleotide exchange domain 161 248 IPR014038 GO:0003746|GO:0006414
Lan9g1410 248 CDD EF1B 157 248 IPR014038 GO:0003746|GO:0006414
Lan9g1410 248 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 237 248 IPR001326 GO:0003746|GO:0005853|GO:0006414
Lan9g1410 248 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 26 248 - -
Lan9g1410 248 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 124 132 IPR001326 GO:0003746|GO:0005853|GO:0006414
Lan9g1410 248 SUPERFAMILY GST C-terminal domain-like 16 89 IPR036282 -
Lan9g1410 248 SUPERFAMILY eEF-1beta-like 156 248 IPR036219 -
Lan9g1410 248 PANTHER TRANSLATION ELONGATION FACTOR EF1B/RIBOSOMAL PROTEIN S6-RELATED 26 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1410 Lan-Chr9 21025797 21027931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1410 26 248 Eukaryotic Initiation Factors Gene Family AT5G12110 70.175 3.23e-101 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1410 K03232 - gmx:100500082 316.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1227 2 23366283 23385032 Lan9g1410 9 21025797 21027931 LSH
Lan4g1100 4 16637155 16639715 Lan9g1410 9 21025797 21027931 PCT
Lan9g1410 9 21025797 21027931 Lan4g1100 4 16637155 16639715 PCT