Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1408 ATGACAAGATCTCCTTGTGAAGTTGGTGATGAAGATGAGATTGTTCAAAAAGGAGGAGCCATCCAAAATTGTGAATTTTGTGGGAAGGAGTTTAAGTCAGGAAAAGCATTAGGTGTTCACAAAAAGATACATTTTGAAGCTCATAGGAATTTGAAATCAAAGAAGGGTAATTGCAATGGCAAAAAGTTCTCTTCTTTGATGCCTTCTAATAGGAAACTGAGACTCTCTTGTTATGTTTGCAATAAGGATTTTCCATCTGAAAAGTCCTTGTGTGGGCATATGAGGACTCACCCCAATAGAGATTGGAGGGGTGTTCATCCTCCTGGTACTACTGCAGATGCTTCTAATAAGCACACCCCTTGTTTCTCTGATTCTAAGGTTCAGATTGATGATGATAACTATGTTGGTGCAATAGCTGCTGCAACAGCTTCTTCTGATGCATCAAGATGTTTAACATTAAGCTGGAAAAAGACCAATAAGCGAAGCGGGCGAAGTGTTTTTTATGCCGAGGTTGTTGCAGCTGCTAAAACACTTGTGTCTTTTACAAGCATGAGTAGGTCATGTGAAGCAATAGAAGGTATAGACACTCAAGTGTCATCATCTAATAGCTATGCTAGAAGTTCATGCTTTAGTCAATTTGATCTGAATGAGCCACCTTATAATCATGCATGA 672 0.3914 MTRSPCEVGDEDEIVQKGGAIQNCEFCGKEFKSGKALGVHKKIHFEAHRNLKSKKGNCNGKKFSSLMPSNRKLRLSCYVCNKDFPSEKSLCGHMRTHPNRDWRGVHPPGTTADASNKHTPCFSDSKVQIDDDNYVGAIAAATASSDASRCLTLSWKKTNKRSGRSVFYAEVVAAAKTLVSFTSMSRSCEAIEGIDTQVSSSNSYARSSCFSQFDLNEPPYNHA* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1408 223 ProSitePatterns Zinc finger C2H2 type domain signature. 77 97 IPR013087 -
Lan9g1408 223 ProSiteProfiles Zinc finger C2H2 type domain profile. 22 44 IPR013087 -
Lan9g1408 223 ProSitePatterns Zinc finger C2H2 type domain signature. 24 44 IPR013087 -
Lan9g1408 223 SUPERFAMILY beta-beta-alpha zinc fingers 23 97 IPR036236 -
Lan9g1408 223 SMART c2h2final6 22 44 IPR013087 -
Lan9g1408 223 SMART c2h2final6 75 97 IPR013087 -
Lan9g1408 223 Pfam C2H2-type zinc finger 77 98 - -
Lan9g1408 223 Pfam C2H2-type zinc finger 23 44 - -
Lan9g1408 223 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 102 IPR013087 -
Lan9g1408 223 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 16 161 IPR044653 GO:0003700
Lan9g1408 223 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY 16 161 - -
Lan9g1408 223 Gene3D Classic Zinc Finger 22 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1408 Lan-Chr9 21022689 21023360 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1408 24 221 C2H2 Transcription Factor Family AT2G26940 25.641 6.79e-11 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan9g1408 zf-C2H2_6 9.8e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1408 - - lang:109356346 460.299