Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lan9g1408 | ATGACAAGATCTCCTTGTGAAGTTGGTGATGAAGATGAGATTGTTCAAAAAGGAGGAGCCATCCAAAATTGTGAATTTTGTGGGAAGGAGTTTAAGTCAGGAAAAGCATTAGGTGTTCACAAAAAGATACATTTTGAAGCTCATAGGAATTTGAAATCAAAGAAGGGTAATTGCAATGGCAAAAAGTTCTCTTCTTTGATGCCTTCTAATAGGAAACTGAGACTCTCTTGTTATGTTTGCAATAAGGATTTTCCATCTGAAAAGTCCTTGTGTGGGCATATGAGGACTCACCCCAATAGAGATTGGAGGGGTGTTCATCCTCCTGGTACTACTGCAGATGCTTCTAATAAGCACACCCCTTGTTTCTCTGATTCTAAGGTTCAGATTGATGATGATAACTATGTTGGTGCAATAGCTGCTGCAACAGCTTCTTCTGATGCATCAAGATGTTTAACATTAAGCTGGAAAAAGACCAATAAGCGAAGCGGGCGAAGTGTTTTTTATGCCGAGGTTGTTGCAGCTGCTAAAACACTTGTGTCTTTTACAAGCATGAGTAGGTCATGTGAAGCAATAGAAGGTATAGACACTCAAGTGTCATCATCTAATAGCTATGCTAGAAGTTCATGCTTTAGTCAATTTGATCTGAATGAGCCACCTTATAATCATGCATGA | 672 | 0.3914 | MTRSPCEVGDEDEIVQKGGAIQNCEFCGKEFKSGKALGVHKKIHFEAHRNLKSKKGNCNGKKFSSLMPSNRKLRLSCYVCNKDFPSEKSLCGHMRTHPNRDWRGVHPPGTTADASNKHTPCFSDSKVQIDDDNYVGAIAAATASSDASRCLTLSWKKTNKRSGRSVFYAEVVAAAKTLVSFTSMSRSCEAIEGIDTQVSSSNSYARSSCFSQFDLNEPPYNHA* | 224 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lan9g1408 | 223 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 77 | 97 | IPR013087 | - | |
Lan9g1408 | 223 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 22 | 44 | IPR013087 | - | |
Lan9g1408 | 223 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 24 | 44 | IPR013087 | - | |
Lan9g1408 | 223 | SUPERFAMILY | beta-beta-alpha zinc fingers | 23 | 97 | IPR036236 | - | |
Lan9g1408 | 223 | SMART | c2h2final6 | 22 | 44 | IPR013087 | - | |
Lan9g1408 | 223 | SMART | c2h2final6 | 75 | 97 | IPR013087 | - | |
Lan9g1408 | 223 | Pfam | C2H2-type zinc finger | 77 | 98 | - | - | |
Lan9g1408 | 223 | Pfam | C2H2-type zinc finger | 23 | 44 | - | - | |
Lan9g1408 | 223 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 75 | 102 | IPR013087 | - | |
Lan9g1408 | 223 | PANTHER | C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED | 16 | 161 | IPR044653 | GO:0003700 | |
Lan9g1408 | 223 | PANTHER | C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY | 16 | 161 | - | - | |
Lan9g1408 | 223 | Gene3D | Classic Zinc Finger | 22 | 97 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lan9g1408 | Lan-Chr9 | 21022689 | 21023360 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lan9g1408 | 24 | 221 | C2H2 Transcription Factor Family | AT2G26940 | 25.641 | 6.79e-11 | 58.9 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Lan9g1408 | zf-C2H2_6 | 9.8e-06 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lan9g1408 | - | - | lang:109356346 | 460.299 |