Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1406 ATGGCTGTGGCAGCCATAGGGCAACTGAACCTAACTGAATCCCCCACTCGTGGTTCGAGAAGCATTGATTGCTTCGAGAAGTTGGAGCAAATTGGCGAGGGCACTTATGGTCAAGTTTACATGGCTAAAGAGATCAAGACAGGTGAAATTGTTGCCCTAAAGAGAATACGAATGGATAACGAGAGAGAGGGATTTCCTATGACTGCTTTACGAGAAATCAAAATTCTACAGAAACTAGACCATGAAAATGTGATCAAGCTTAAAGAAATCGTGACATCTCCAGGCCCTCAGAAAGATGAACAAGGAAGGCCAGATGCTAACAAATATAAAGGTGGCATCTATATGGTCTTTGAATACATGGACCATGATTTGACAGGTCTTGCTGACCGTCCTGGGATGAGATTTACAGTTCCACAAATTAAGTGTTATATGAAACAGCTTTTGATGGGGCTTCACTATTGTCATTTAAATCATGTTCTCCATCGTGATATCAAAGGGTCAAACCTTCTAATAGACAATGAAGGCAATCTGAAGCTTGCCGATTTTGGATTGGCAAGATCATTTCCTAATGACCGGAATGCAAATCTTACAAATCGTGTCATCACCTTATGGTACAGGCCACCTGAGTTACTGCTAGGGGCAACGAAGTATGGGACAGCAGTAGATATGTGGTCTGTTGGGTGCATTTTAGGTGAGCTTCTTAATGGGAAGCCTATCTTTCAAGGAAAAGATGAGTCAGAACAATTAAATAAAATATTTGAACTGTGTGGAGCACCAGATGAGGTGATCTGGCCTGGGGTTTCTAAGCTTCCTTGGTATAATCAATTTAAGCCAACAAGGCCAATGAAAAGACGCCTCAGTGAAGTTTTTAAGCATTTTGATCATCATGCTTTGGAATTGTTGGAGACGATGCTGGCACTTGATCCGGCTAAGAGAATTACTGCCAAAGATGCACTTGATGCTGAATATTTCTGGACTGATCCATTTCCGTGTGATCCGAAAAGTTTACCCAAGTATGAGTCATCACATGAGTTTCAGACAAAGAAAAAGCGCCAGCAGCAACGGAAAAATGAAGAAATGGCTAAGCGTCAGAAAATGAAACAGCAGCAACAACAGCAGCAGCAACAGCAGCAGCAGCAACAGCAGCACACCCGTCTTCCCCCCATTCAGCAGTCTGGGCAACATGCCCAAATGCGACCAGGACCTAACCAGCAAGCTCATGGCGCTCATCAAGTTCATCCTGGTGGACCTGGTCATCATTATGGGAATCCTCAAGGTCCATCTGGTGGGCCAGGAAGATATCCTCCTGGTGCAAACCCTGGTGGAGGATACAATCACCCGAATCATGGAGGTCAAGGAGGAGAAGGAGGTTATGGCAGTGGACCTTTTCCTCCTCAAGCGAGAGGGGCACCTTTTCCTCCTCAAGCGAGAGGGGCACCTTTTCCTCCTCAAGTGAGAGGGGCACCGTTTCCTCCTCAAGCGAGAGGGGCACCTTTTCCACCTCAAGGTGGTGGCGACGGCGGCTTTGGAGTTGGAGCTCCAAATTATACCCAGCAAGGTCCATATGGTGGGTCAGCAGCTGGCCGTGGTTCAAACATGGGTGGAAACGGCAACCAAGAGTCATAG 1626 0.4619 MAVAAIGQLNLTESPTRGSRSIDCFEKLEQIGEGTYGQVYMAKEIKTGEIVALKRIRMDNEREGFPMTALREIKILQKLDHENVIKLKEIVTSPGPQKDEQGRPDANKYKGGIYMVFEYMDHDLTGLADRPGMRFTVPQIKCYMKQLLMGLHYCHLNHVLHRDIKGSNLLIDNEGNLKLADFGLARSFPNDRNANLTNRVITLWYRPPELLLGATKYGTAVDMWSVGCILGELLNGKPIFQGKDESEQLNKIFELCGAPDEVIWPGVSKLPWYNQFKPTRPMKRRLSEVFKHFDHHALELLETMLALDPAKRITAKDALDAEYFWTDPFPCDPKSLPKYESSHEFQTKKKRQQQRKNEEMAKRQKMKQQQQQQQQQQQQQQQHTRLPPIQQSGQHAQMRPGPNQQAHGAHQVHPGGPGHHYGNPQGPSGGPGRYPPGANPGGGYNHPNHGGQGGEGGYGSGPFPPQARGAPFPPQARGAPFPPQVRGAPFPPQARGAPFPPQGGGDGGFGVGAPNYTQQGPYGGSAAGRGSNMGGNGNQES* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1406 541 MobiDBLite consensus disorder prediction 336 541 - -
Lan9g1406 541 Gene3D Phosphorylase Kinase; domain 1 12 121 - -
Lan9g1406 541 SMART serkin_6 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan9g1406 541 PANTHER CELL DIVISION PROTEIN KINASE 5 462 - -
Lan9g1406 541 PANTHER CYCLIN-DEPENDENT KINASE C-2 5 462 - -
Lan9g1406 541 Gene3D Transferase(Phosphotransferase) domain 1 122 362 - -
Lan9g1406 541 Coils Coil 349 386 - -
Lan9g1406 541 CDD STKc_CDK9_like 25 324 - -
Lan9g1406 541 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Lan9g1406 541 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Lan9g1406 541 Pfam Protein kinase domain 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan9g1406 541 MobiDBLite consensus disorder prediction 518 541 - -
Lan9g1406 541 MobiDBLite consensus disorder prediction 337 365 - -
Lan9g1406 541 SUPERFAMILY Protein kinase-like (PK-like) 20 332 IPR011009 -
Lan9g1406 541 ProSiteProfiles Protein kinase domain profile. 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan9g1406 541 MobiDBLite consensus disorder prediction 466 498 - -
Lan9g1406 541 MobiDBLite consensus disorder prediction 366 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1406 Lan-Chr9 21012784 21017370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1406 1 517 Core Cell Cycle Gene Families AT5G10270 69.732 0.0 710
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lan9g1406 Pkinase 3.5e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1406 K08819 - gmx:100793565 786.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0166 11 1058568 1064654 Lan9g1406 9 21012784 21017370 LSH