Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1405 ATGAGTCAGCCTAAGATTAAGCGCCGAGTTGGTAAATACGAGATAGGGAGGACGATTGGTGAGGGGACCTTTGCAAAGGTGAAATTTGCTAGAAACTCTGAGACAGGGGAGCATGTGGCTCTCAAAATTCTGGACAAAGAGAAAGTTCTTAAGCACAAGATGTCTGAGCAGATCAGGAGGGAAATAGCTACCATGAAGTTAATCAAGCATCCAAATGTTGTTCAACTATTTGAGGTAATGGGAAGCAAGACAAAAATATATATTGTTTTGGAGTTTGTGACTGGAGGAGAGCTCTTTGACAAAATTGTAAACCATGGACGGATGAGTGAAAGTGAAGCACGTAGATATTTCCAACAGCTTATAAACGCTGTTGATTATTGCCATAGCAGGGGTGTCTACCATAGAGACCTGAAGCCAGAGAATCTACTCTTAGATACTTATGGGAACCTTAGAGTTTCCGATTTTGGGTTGAGTGCACTTTCTCAACAAGTCAGGGCTGATGGACTTCTCCATACTACATGCGGAACTCCAAATTATGTTGCTCCCGAGGTCCTTAATGACAGAGGCTATGATGGGGCTACTGCAGATTTATGGTCATGTGGGGTGATTCTCTTTGTATTGATTGCAGGTTACTTGCCGTTCGATGATCATAATCTGATGAGCTTGTATAAAAAAATCTCAGGTGCTGAATTTACTTGCCCCCCATGGCTTTCTTTCAGTGCTAGGAAATTGATATCTCGAATCTTGGATCCCAATCCCGTGACTCGTATCACTATAGCTGAGATATTGGATGATGAATGGTTTAAGGTAGACTATAAGCCTCCAGTTTTCGACGAGAAAGCGGAAACCAGCCTCGATGATGTAGAAGCTGTCTTTCAAGATTGTGAAGAGCACCATGTGACAGAAAGGAAGGAAGAGCAACCAACAGCCATGAATGCATTCGAATTAATTTCCATGTCCAGAGGGCTAAACCTTGAAAATTTGTTTGAGGAGCAGCAAGGGTTTAAAAGGGAAACAAGATTCACATCAAAATCCTCTGCCAATGAGATAGTCAACAAGATCGAAGAAGCTGCAAAACCTCTTGGATTTGATGTACAGACGAAAAATTACAAGATGAGGCTCGCAAATGTGAAAGCTGGAAGGAAGGGAAACCTTAATGTTGCCACAGAGATATTTCAAGTTGCGCCTTCTCTTCACATGGTTGAGGTACGAAAAGCAAAAGGCGATACATTGGAGTTCCATAAGTTCTACAAAAAACTTTCAACAAGCCTGGAAGATGTTGTTTGGAAAACAGATGATGATATGCAAACACAAGAAACAAAGTGA 1326 0.4163 MSQPKIKRRVGKYEIGRTIGEGTFAKVKFARNSETGEHVALKILDKEKVLKHKMSEQIRREIATMKLIKHPNVVQLFEVMGSKTKIYIVLEFVTGGELFDKIVNHGRMSESEARRYFQQLINAVDYCHSRGVYHRDLKPENLLLDTYGNLRVSDFGLSALSQQVRADGLLHTTCGTPNYVAPEVLNDRGYDGATADLWSCGVILFVLIAGYLPFDDHNLMSLYKKISGAEFTCPPWLSFSARKLISRILDPNPVTRITIAEILDDEWFKVDYKPPVFDEKAETSLDDVEAVFQDCEEHHVTERKEEQPTAMNAFELISMSRGLNLENLFEEQQGFKRETRFTSKSSANEIVNKIEEAAKPLGFDVQTKNYKMRLANVKAGRKGNLNVATEIFQVAPSLHMVEVRKAKGDTLEFHKFYKKLSTSLEDVVWKTDDDMQTQETK* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1405 441 Gene3D Phosphorylase Kinase; domain 1 3 92 - -
Lan9g1405 441 Gene3D Kinase associated domain 1, KA1 305 430 - -
Lan9g1405 441 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Lan9g1405 441 ProSiteProfiles Protein kinase domain profile. 13 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan9g1405 441 PANTHER - 2 432 - -
Lan9g1405 441 SMART serkin_6 13 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan9g1405 441 Gene3D Transferase(Phosphotransferase) domain 1 93 274 - -
Lan9g1405 441 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 3 2 432 - -
Lan9g1405 441 Pfam NAF domain 308 366 IPR004041 GO:0007165
Lan9g1405 441 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Lan9g1405 441 CDD STKc_SnRK3 12 267 - -
Lan9g1405 441 CDD CIPK_C 312 426 - -
Lan9g1405 441 ProSiteProfiles NAF domain profile. 306 330 IPR018451 GO:0007165
Lan9g1405 441 Pfam Protein kinase domain 13 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan9g1405 441 SUPERFAMILY Protein kinase-like (PK-like) 9 289 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1405 Lan-Chr9 21005055 21010347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1405 5 411 CBL-interacting serine-threonine protein kinases AT2G26980 78.378 0.0 686
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Lan9g1405 Pkinase 3.1e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1405 - - gmx:100794566 818.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1222 2 23329349 23335122 Lan9g1405 9 21005055 21010347 LSH
Lan11g0167 11 1068829 1074606 Lan9g1405 9 21005055 21010347 LSH