Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1401 ATGGCCAAGAAGCGAAAGCTCCGATCTTCCGACATCGAACCCACCAAGCAACCCGATTCCGATGTTATACAGGAACAACAACAAACCCTAGAAGGAGCCCAGGACCACATGTCCATCGATCAACAACAACAACAACAACCCATTGAAGAGTACAATCAAATCGAAGAACAACAACAACTAGAGGAAGATGTCGAAGAAGGAAATGATGATGATGAAGCAGCACCGGAAAATGAAACCCTAGAAGACCAGAATCAGGAGCAGGATGCTGAACCTTCCAACGACGACGCTGCTACACCATCTGAATCGGTTAAAGTCGAAGTGAACGGTGAAGGAAACAACGAAGAGGAGGAAGATCTAGAATTGGAAGAGGAGCCTGTTGAGAAGCTTCTAGAACCTTTCACCAAGGAGCAGCTACACGCTCTCGTCAAACAAGCCGTTGAGAAGTTCCCTGATTTCGCCGAGAATGTTCGCCAGCTGGCAGATGTGGACCCCGCTCATCGGAAAATCTTCATCCATGGCCTAGGTTGGGATGCCACAGCTGAAACCCTCACCTCATTGTTCTCCAAGTATGGCGAAATCGAAGACTGCAAGGCTGTTACTGATAAACTCTCTGGGAAATCGAAAGGTTATGCATTTATCCTCTTCAAACATCGTAGCGGAGCACGCAAGGCGCTGAAGCAGCCGCAGAAGAAGATAGGTAACAGAATCACTTCATGTCAATTGGCCTCTGCTGGACCTGTTCCAGCGCCTCCTCCGGTTGCTCCTGCGGTTTCAGAGTATACACAGAGGAAGATTTTTGTGAGCAATGTGAGTGCTGACATTGATCCCCAGAAGCTTCTTGAGTTTTTCAGGCAATTTGGGGAGGTGGAAGACGGTCCTCTTGGTCTCGATAAGCAGACTGGGAAGCCGAGAGGGTTTGCACTTTTCGTTTATAAATCTGTGGATAGTGCGAAGAAGGCTCTGGAAGATCCCCATAAGCAGTATGAGGGCCATGTTTTGTATTGCCAGAAAGCTGTTGATGGCCCTAAGGGGAAACAAGGATATCATCAGCAACCACATCACCAACATCATCAGCACCAGCACCATTCTCACCATCATCACCAGCCTCACTTTCAACGGAAGGATAAGAACAAATATTCTTCTAGTGGTGGGCCTGCACATGGTGGCGGGCACTTGATGGCACCATCAGGTCCTTCTGTGGGAGGTTACAATCCGGGAGTGCCTGCAGCTCAGGGATTAAATCCAGTGCTTGGTCAGGCGATATCAGCTTTGCTTACAACCCAAGGAGCCGGGTTGGGACTTGGGAACTTGCTTGGAGGTCTTGGCGGTGCACATATGAATCACTCTGTTCCACCTGCTGGGTATGGTAATCAGCCTACTATGAACTATGGGAACCAGCCAGGGATGCAGCAGGGATACCAGAATCCTCAAATGGGGCAGAACAGTGGTGTTAGGCCTCATCCGGGTGCTGGTGCTCCTTACATGGGTCATTAG 1494 0.4933 MAKKRKLRSSDIEPTKQPDSDVIQEQQQTLEGAQDHMSIDQQQQQQPIEEYNQIEEQQQLEEDVEEGNDDDEAAPENETLEDQNQEQDAEPSNDDAATPSESVKVEVNGEGNNEEEEDLELEEEPVEKLLEPFTKEQLHALVKQAVEKFPDFAENVRQLADVDPAHRKIFIHGLGWDATAETLTSLFSKYGEIEDCKAVTDKLSGKSKGYAFILFKHRSGARKALKQPQKKIGNRITSCQLASAGPVPAPPPVAPAVSEYTQRKIFVSNVSADIDPQKLLEFFRQFGEVEDGPLGLDKQTGKPRGFALFVYKSVDSAKKALEDPHKQYEGHVLYCQKAVDGPKGKQGYHQQPHHQHHQHQHHSHHHHQPHFQRKDKNKYSSSGGPAHGGGHLMAPSGPSVGGYNPGVPAAQGLNPVLGQAISALLTTQGAGLGLGNLLGGLGGAHMNHSVPPAGYGNQPTMNYGNQPGMQQGYQNPQMGQNSGVRPHPGAGAPYMGH* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1401 497 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 263 346 IPR000504 GO:0003723
Lan9g1401 497 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 1 484 - -
Lan9g1401 497 MobiDBLite consensus disorder prediction 16 54 - -
Lan9g1401 497 MobiDBLite consensus disorder prediction 1 15 - -
Lan9g1401 497 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 169 235 IPR000504 GO:0003723
Lan9g1401 497 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 265 333 IPR000504 GO:0003723
Lan9g1401 497 Gene3D - 254 389 IPR012677 -
Lan9g1401 497 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 167 244 IPR000504 GO:0003723
Lan9g1401 497 CDD RRM_RBM24_RBM38_like 263 338 - -
Lan9g1401 497 MobiDBLite consensus disorder prediction 339 400 - -
Lan9g1401 497 CDD RRM_RBM24_RBM38_like 167 242 - -
Lan9g1401 497 MobiDBLite consensus disorder prediction 55 89 - -
Lan9g1401 497 MobiDBLite consensus disorder prediction 476 497 - -
Lan9g1401 497 SUPERFAMILY RNA-binding domain, RBD 156 244 IPR035979 GO:0003676
Lan9g1401 497 SMART rrm1_1 264 336 IPR000504 GO:0003723
Lan9g1401 497 SMART rrm1_1 168 240 IPR000504 GO:0003723
Lan9g1401 497 MobiDBLite consensus disorder prediction 1 123 - -
Lan9g1401 497 MobiDBLite consensus disorder prediction 349 373 - -
Lan9g1401 497 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 1 484 - -
Lan9g1401 497 SUPERFAMILY RNA-binding domain, RBD 247 359 IPR035979 GO:0003676
Lan9g1401 497 Gene3D - 159 245 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1401 Lan-Chr9 20990697 20993523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1401 242 350 C2H2 Transcription Factor Family AT2G19380 29.358 4.07e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1401 K12741 - gmx:100792637 590.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1216 2 23297443 23301495 Lan9g1401 9 20990697 20993523 LSH
Lan11g0170 11 1086613 1090773 Lan9g1401 9 20990697 20993523 LSH