Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1398 ATGGATTTGTTTGAGACAAACGGTAATGGAAATGGAAATGGTATTGATGCTGAGGACTCTCTTCCTCCACCACCTCCTGTTGTGCCACAAGATGTCGTGCCAGTTAAAGCTGAGCAGCAGCCGCCACCACCCGAGCCTGCTAAGAAAAAGCCTTCCAGGGTTCCAATGGCCAGGCGTGGTACTGGATCAAAGGGAACTAAGCTGCAACTTCTCACTAACCACTTCAAAGTGAATGTCAACAACAATGATGGGCATTTCTTCCAGTATAGTGTTTCTCTTGCATACGAAGATGGACGCCCTGTTGAAGGCAAGGGCGTTGGAAGGAAAGTTATTGACAAGGTGCAGGAAACTTATGATTCTGAGTTAAATGGAAAGGACTTCGCCTATGATGGTGAGAAAACTCTGTTTACAATTGGTCCTCTCGCTGGAAACAAACTTGAGTTTCAAGTTGTGCTGGAGGATGTCACCTCAAACAGAAACAATGGAAACTGCAGCCCTGAAAATGGAACTCAAAATGAGAGTGACAAGAAGAGGATGCGACGCCCCTATCGTGCCAAGACATTTAAAGTTGAGCTCAGCTTTGCCTCGAAAATTCCAATGCAGGCTATCGCCAATGCATTGCGTGGGCAGGAATCTGAAAATTTTCAAGAAGCCATAAGGGTGCTTGATATCATATTGAGGCAACATGCTTCTAAGCAAGGCTGTCTACTTGTGCGGCAATCATATTTTCACAATGATCCCAAGAATTTTGCGGATGTCGGAGGCGGTGTACTTGGATGCAGAGGTTTCCATTCTAGTTTCAGAACTACACAAAGTGGCCTGTCTCTGAATATAGATGTCTCTACAACAATGATAATTACTCCTGGGCCTGTGGTGGACTTCTTAATTGCCAACCAAAATGTGAGAGATCCCTTTTCACTTGACTGGGCAAAGGCAAAAAGGACTCTGAAAAATCTTAGGATTAAAACTAGCCCATCCAATCAGGAGTTCAAGATTACTGGTCTCAGTGAACTCCCCTGCAAAGAGCAGATGTTTACACTGAAGACCAAAGGGGGTGCTGATGATGCTACTGAGGAAGTCACAGTTTATGACTATTTTGTTAACCATCGTAACATTCAACTGCGGTACTCAGCTGATCTCCCTTGTATTAATGTTGGGAAGCCCAAACGGCCAACTTACTTCCCCCTTGAGCTTTGCTCCTTAGTGTCATTGCAACGCTATACAAAGGCACTTTCCACTCTTCAAAGGGCTTCTTTGGTGGAGAAGTCCAGGCAGAAGCCACAAGAGCGTATGAGGGTTCTGTCTGATGCTCTGAAGATAAGCAACTATGGTGCTGAACCCATGCTACGCAATTGTGGTATTCAGATAAACCCTAGCTTTACTCAAGTGGATGGTCGTGTTTTGCAAGCTCCAAGGTTGAAGTTTGGCAATGGTGAGGATTTCAATCCAAGGAATGGGAGATGGAATTTTAATAATAAGAAAATTGTGGATCCAGTGAAGATAGAAAGATGGGCGGTGGTCAATTTTTCAGCACGCTGCAATGTTCAAGCGCTTGTGCGGGACCTAATTAAATGTGGAAATATGAAAGGAATTATGGTCGAAGACCCTTTTGATGTATTTGAAGAAAACACTCAGTTTAGGCGTGCCCCACCTGTGGTAAGAGTGGAAAAGATGTTCGAGCATATGATGTCTAAACTTCCCGGGGCACCCAAGTTTCTTCTTTGTCTGCTTCCTGAGCGGAAAAACTCTGACCTTTATGGACCTTGGAAGAAGAAGAATCTTGCCGACTTTGGTATTGTTACTCAGTGCATTGCACCTACCAAGGTCAACGATCAGTATCTGACTAATGTTTTGCTGAAAATCAATGCTAAGCTTGGTGGGATGAATTCACTGCTGGGTGTGGAGCATTCTCCTTCCATTCCTATCATTTCGAAAGCTCCCACCCTCATTCTTGGTATGGATGTCTCACATGGTTCTCCAGGACAATCTGATATTCCTTCAATTGCAGCGGTGGTTAGCTCTCGACACTGGCCTCTGATATCAAAATATAGGGCTTGTGTGCGTACTCAGTCTCCAAAGGTTGAGATGATTGATAATTTGTTTAAGAAAGTATCCGACAAGGAAGATGAAGGCATTATCAGGGAACTACTGATTGACTTCTATACAAGTTCTGGGAAGAGGAAGCCAGACAATATAATCATATTTAGGGATGGTGTGAGTGAATCTCAATTTAATCAAGTTTTGAATCAGGAACTTGATCAAATCATTCAGGCCTGCAAATTTCTTGATGAAAACTGGGATCCCAAGTTTTTGGTCATTGTTGCTCAAAAGAACCACCACACAAAGTTTTTCCAGCCTGGATCACCTGATAATGTTCCTCCTGGCACTGTTATTGATAATAAAGTTTGCCACCCTCGCAACTATGATTTCTACTTGTGTGCTCATGCTGGAATGATAGGCACCACTAGGCCTACACACTATCATGTTCTGTTAGATGAGATTGGCTTCTCCACGGATGATCTACAGGAACTTGTTCATTCTTTGTCCTATGTGTACCAGAGGAGCACAACTGCCATTTCTGTTGTTGCTCCAATATGCTATGCTCACCTTGCCGCAACTCAAATGGGACAGTTTATGAAATTCGAGGACAAATCTGAGACATCATCAAGTCATGGTGGTCTGACTGCTGCTGGAGCAGTTCCCGTTCCTCAGTTGCCCAAACTGGAGGAGAAGGTCTGCAACTCTATGTTCTTTTGTTGA 2760 0.4388 MDLFETNGNGNGNGIDAEDSLPPPPPVVPQDVVPVKAEQQPPPPEPAKKKPSRVPMARRGTGSKGTKLQLLTNHFKVNVNNNDGHFFQYSVSLAYEDGRPVEGKGVGRKVIDKVQETYDSELNGKDFAYDGEKTLFTIGPLAGNKLEFQVVLEDVTSNRNNGNCSPENGTQNESDKKRMRRPYRAKTFKVELSFASKIPMQAIANALRGQESENFQEAIRVLDIILRQHASKQGCLLVRQSYFHNDPKNFADVGGGVLGCRGFHSSFRTTQSGLSLNIDVSTTMIITPGPVVDFLIANQNVRDPFSLDWAKAKRTLKNLRIKTSPSNQEFKITGLSELPCKEQMFTLKTKGGADDATEEVTVYDYFVNHRNIQLRYSADLPCINVGKPKRPTYFPLELCSLVSLQRYTKALSTLQRASLVEKSRQKPQERMRVLSDALKISNYGAEPMLRNCGIQINPSFTQVDGRVLQAPRLKFGNGEDFNPRNGRWNFNNKKIVDPVKIERWAVVNFSARCNVQALVRDLIKCGNMKGIMVEDPFDVFEENTQFRRAPPVVRVEKMFEHMMSKLPGAPKFLLCLLPERKNSDLYGPWKKKNLADFGIVTQCIAPTKVNDQYLTNVLLKINAKLGGMNSLLGVEHSPSIPIISKAPTLILGMDVSHGSPGQSDIPSIAAVVSSRHWPLISKYRACVRTQSPKVEMIDNLFKKVSDKEDEGIIRELLIDFYTSSGKRKPDNIIIFRDGVSESQFNQVLNQELDQIIQACKFLDENWDPKFLVIVAQKNHHTKFFQPGSPDNVPPGTVIDNKVCHPRNYDFYLCAHAGMIGTTRPTHYHVLLDEIGFSTDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAATQMGQFMKFEDKSETSSSHGGLTAAGAVPVPQLPKLEEKVCNSMFFC* 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1398 919 Coils Coil 745 765 - -
Lan9g1398 919 SMART DUF1785_2 236 288 IPR014811 -
Lan9g1398 919 CDD PAZ_argonaute_like 288 402 - -
Lan9g1398 919 SUPERFAMILY PAZ domain 283 443 IPR036085 GO:0005515
Lan9g1398 919 MobiDBLite consensus disorder prediction 19 50 - -
Lan9g1398 919 ProSiteProfiles Piwi domain profile. 572 880 IPR003165 GO:0003676
Lan9g1398 919 SUPERFAMILY Ribonuclease H-like 564 878 IPR012337 -
Lan9g1398 919 Pfam Argonaute linker 1 domain 238 286 IPR014811 -
Lan9g1398 919 SMART Piwi_a_2 572 880 IPR003165 GO:0003676
Lan9g1398 919 Gene3D - 467 633 - -
Lan9g1398 919 Pfam N-terminal domain of argonaute 67 226 IPR032474 -
Lan9g1398 919 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 4 918 - -
Lan9g1398 919 Pfam PAZ domain 292 419 IPR003100 GO:0005515
Lan9g1398 919 MobiDBLite consensus disorder prediction 157 180 - -
Lan9g1398 919 Gene3D - 639 919 IPR036397 GO:0003676
Lan9g1398 919 Pfam Argonaute linker 2 domain 429 475 IPR032472 -
Lan9g1398 919 Gene3D paz domain 282 407 - -
Lan9g1398 919 ProSiteProfiles PAZ domain profile. 313 403 IPR003100 GO:0005515
Lan9g1398 919 Pfam Piwi domain 573 880 IPR003165 GO:0003676
Lan9g1398 919 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 4 918 - -
Lan9g1398 919 MobiDBLite consensus disorder prediction 1 66 - -
Lan9g1398 919 CDD Piwi_ago-like 447 874 IPR045246 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1398 Lan-Chr9 20969504 20976592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1398 23 919 Eukaryotic Initiation Factors Gene Family AT1G48410 34.627 1.46e-165 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1398 K11593 - gmx:100779439 1581.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1214 2 23274908 23284781 Lan9g1398 9 20969504 20976592 LSH