Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1372 ATGCAAGTGTCAGAAATCCAACAACTTCAAGTAAAACATCACAAACAACATAATCATCATAACCAAGACACACCCATGTGCCAAAAGAAGATCCAAATTCAAGATGAGAAGAAGGTTATTGTGGAAGGTGATGATTTTCTCGTTCCACCCCTCAATTTTGCAATGGTGGATAATGGCATTTATCGTTCTGGTTTCCCTAAACCAGATAACTTCTCCTTTCTCCAAACCCTTCGTCTCCGTTCTATCATATATTTGTGTCCTGAACCATACCCACAAACCAACTTGGAGTTCCTCGACTCTAATGGGATCAAGCTTTATCAATTTGGAATTGAGGGTCATAAGGACCATTGTGTGGATATGTCAAAAATTTATCCTGTTCAAGCAGAAATTTGCCCTCTAATAATGCAAGTATACAGTAAAGAAATGGAACAGAATAAAAATCATGATCAACCCAAGAAAGGCAAGGAGGAGCCTTTTGTAAACATCCCAGAGGACACAATCCGTGAAGCACTAAAAGTTCTTCTTGATGTCAGGAACCACCCTCTCATTATTCACTGTAAACGTGGAAAGCACCGAACCGGTTGTTTAGTAGGATGCTATAGAAAATTGCAAAAATGGTGCTTGTCATCAGTGTTTGATGAGTACCAGCGCTTTGCAGCTGCCAAAGCAAGAGTTTCAGATCAGAGGTTTGTAGAGTTGTTTGATATTTCCAGCATCAAGCATATACCTATAGCATTTTCATGTTTGAAGAGATAA 756 0.3915 MQVSEIQQLQVKHHKQHNHHNQDTPMCQKKIQIQDEKKVIVEGDDFLVPPLNFAMVDNGIYRSGFPKPDNFSFLQTLRLRSIIYLCPEPYPQTNLEFLDSNGIKLYQFGIEGHKDHCVDMSKIYPVQAEICPLIMQVYSKEMEQNKNHDQPKKGKEEPFVNIPEDTIREALKVLLDVRNHPLIIHCKRGKHRTGCLVGCYRKLQKWCLSSVFDEYQRFAAAKARVSDQRFVELFDISSIKHIPIAFSCLKR* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1372 251 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 47 236 IPR029021 -
Lan9g1372 251 Pfam Tyrosine phosphatase family 47 242 IPR004861 -
Lan9g1372 251 PANTHER - 19 249 - -
Lan9g1372 251 CDD PFA-DSP_Siw14 47 235 - -
Lan9g1372 251 PRINTS Plant and fungal dual specificity phosphatase signature 47 64 IPR020428 GO:0016791
Lan9g1372 251 PRINTS Plant and fungal dual specificity phosphatase signature 84 97 IPR020428 GO:0016791
Lan9g1372 251 PRINTS Plant and fungal dual specificity phosphatase signature 103 117 IPR020428 GO:0016791
Lan9g1372 251 ProSiteProfiles Dual specificity protein phosphatase domain profile. 52 245 IPR020422 GO:0006470|GO:0008138
Lan9g1372 251 ProSitePatterns Tyrosine specific protein phosphatases active site. 184 194 IPR016130 GO:0016311|GO:0016791
Lan9g1372 251 Gene3D Protein tyrosine phosphatase superfamily 46 238 IPR029021 -
Lan9g1372 251 PANTHER TYROSINE-PROTEIN PHOSPHATASE 19 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1372 Lan-Chr9 20808005 20811487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1372 41 251 Protein tyrosine phosphatase (PTP) family AT2G32960 59.906 1.59e-92 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1372 K18045 - gmx:100814279 317.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0204 11 1290608 1293194 Lan9g1372 9 20808005 20811487 LSH