Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1370 ATGTCAGAAAACAGACACCCTCTCAGGAATGCTGTTTCTAATCACTCTGGTGATAACATTGAAGAAGCCGTTCTGCGTTTGAATATCAATGATAATCAGGATAGAGATGCTGCTGCTCAATCAATCCCATTTCCGGAGCGACCCGGTGAACCTGACTGCTTATATTTTTTGAGGACTGGAATGTGTGGTTATGGGAGTGCCTGCCGCTATAACCACCCTGCTAATGTTTCACTGGGTATTCATTATGGTGAAGAACTCCCTGAGAGAGTTGGGCAACCTGATTGTGAGTATTTTCTTAAGACAGGGACGTGCAAGTATGGTTCGACGTGTAAATATCACCATCCAAGGGACAGGCGAGGTGCTGCTCCTGTATCATTCAATTCCTTAGGTCTTCCTATGCGTCAGGAAGAAAGATCATGTCCCTATTACATGAGAACTGGGTCTTGTAAGTTTGGAGTCGCATGCAAGTTTCATCATCCTCAAATTGGAGCTTCGCCTGTGGCCGGATCTCCTACCTCAACAATTCTTCCTACATCAGGTTTACCGTATGTTGGTGGGTTTTCTGCATGGCAATTACCAAGAATGTCATATTTATCTGGGCAGGGCATTCAATCTTATGTGCCTCCTTTTCTGTCTTCTCCACAAGGCATTATACCTGCACAGAACTGGAATACCTACATGGGAAGTATGAGCGGCGCAATAACTACCGGTTTTGTTGGATCTAATTTTGTTTACGATACCATGAACCTCGGTGAACCACTTCTTTGTGGTGGTCAGATGATAAGTCCAGTTCTCCCAGAGAGACCTGGTCAGCCAGAATGTAGATACTTTATGAGCACTGGTACCTGCAAATATGGATCTGATTGTAAGTACCACCATCCAAAAGAAAGAACTGCCCAATCATTGATGAATCCAGTTGGCCTTCCTCTCAGACCTGGGCATGCTATATGTTCTTATTATAGACTCTGTGGAGTATGCAAATTTGGCCCAACATGCAAATTTGATCATCCAATTTTGGCAATTCCCCAGAGCTATGGTTTGACCTCCTCACATGCTTTCTCAGTACCTGACACATCTTTTATTAATAGTTCAAGAGTTTTGTCAACTGTCCAACCACCTAATACATCTATATCTAACTTATCAAATGGCAAGGTTCAACACTCTGATACAAAAACTACCGAAGATTCATCGAAACAAGTTGATTCTACTACACCAGATTCCTTCCCAGCCACCTCAAAGTCCTAA 1245 0.4321 MSENRHPLRNAVSNHSGDNIEEAVLRLNINDNQDRDAAAQSIPFPERPGEPDCLYFLRTGMCGYGSACRYNHPANVSLGIHYGEELPERVGQPDCEYFLKTGTCKYGSTCKYHHPRDRRGAAPVSFNSLGLPMRQEERSCPYYMRTGSCKFGVACKFHHPQIGASPVAGSPTSTILPTSGLPYVGGFSAWQLPRMSYLSGQGIQSYVPPFLSSPQGIIPAQNWNTYMGSMSGAITTGFVGSNFVYDTMNLGEPLLCGGQMISPVLPERPGQPECRYFMSTGTCKYGSDCKYHHPKERTAQSLMNPVGLPLRPGHAICSYYRLCGVCKFGPTCKFDHPILAIPQSYGLTSSHAFSVPDTSFINSSRVLSTVQPPNTSISNLSNGKVQHSDTKTTEDSSKQVDSTTPDSFPATSKS* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1370 414 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 26 5 400 - -
Lan9g1370 414 SMART c3hfinal6 268 295 IPR000571 GO:0046872
Lan9g1370 414 SMART c3hfinal6 311 338 IPR000571 GO:0046872
Lan9g1370 414 SMART c3hfinal6 134 161 IPR000571 GO:0046872
Lan9g1370 414 SMART c3hfinal6 89 116 IPR000571 GO:0046872
Lan9g1370 414 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Lan9g1370 414 Gene3D - 120 166 - -
Lan9g1370 414 Gene3D - 44 117 - -
Lan9g1370 414 PANTHER PROTEIN PHOSPHATASE RELATED 5 400 - -
Lan9g1370 414 SUPERFAMILY CCCH zinc finger 133 161 IPR036855 GO:0046872
Lan9g1370 414 SUPERFAMILY CCCH zinc finger 313 338 IPR036855 GO:0046872
Lan9g1370 414 ProSiteProfiles Zinc finger C3H1-type profile. 89 117 IPR000571 GO:0046872
Lan9g1370 414 SUPERFAMILY CCCH zinc finger 272 297 IPR036855 GO:0046872
Lan9g1370 414 SUPERFAMILY CCCH zinc finger 52 74 IPR036855 GO:0046872
Lan9g1370 414 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Lan9g1370 414 ProSiteProfiles Zinc finger C3H1-type profile. 268 296 IPR000571 GO:0046872
Lan9g1370 414 ProSiteProfiles Zinc finger C3H1-type profile. 134 162 IPR000571 GO:0046872
Lan9g1370 414 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 73 IPR000571 GO:0046872
Lan9g1370 414 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 313 337 IPR000571 GO:0046872
Lan9g1370 414 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 92 116 IPR000571 GO:0046872
Lan9g1370 414 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 137 161 IPR000571 GO:0046872
Lan9g1370 414 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 270 295 IPR000571 GO:0046872
Lan9g1370 414 SUPERFAMILY CCCH zinc finger 93 118 IPR036855 GO:0046872
Lan9g1370 414 ProSiteProfiles Zinc finger C3H1-type profile. 311 339 IPR000571 GO:0046872
Lan9g1370 414 MobiDBLite consensus disorder prediction 371 387 - -
Lan9g1370 414 MobiDBLite consensus disorder prediction 371 414 - -
Lan9g1370 414 Gene3D - 270 341 - -
Lan9g1370 414 MobiDBLite consensus disorder prediction 397 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1370 Lan-Chr9 20773582 20777690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1370 1 407 C3H Transcription Factor Family AT1G04990 46.028 8.43e-115 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan9g1370 zf-CCCH 1.2e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1370 - - vra:106765262 652.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1181 2 22958500 22962419 Lan9g1370 9 20773582 20777690 LSH
Lan11g0205 11 1310691 1314688 Lan9g1370 9 20773582 20777690 LSH