Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1369 ATGCGCCACCGTGTCAGAAACGCAGATCCAACAACACCAAACGACGCCGTTCCAGCACCACCACCAACCCAACCAACAAACCCTATTCAGGAACCGCGATTCCGCGGCGTAAGGAAGCGACCATGGGGTCGATTCGCCGCAGAGATAAGAGATCCATGGAAGAAAGCACGTGTATGGTTAGGAACCTTCGATTCCGCCGAAGATGCCGCACGAGCTTACGATGCAGCCGCACGATCCTTTCGAGGACCTAGAGCGAAGACTAATTTCCCTTTCTCTTCGTCAAACCCTTCCCAAATCGCAATCTATAACCGCGGTTTCGAAAATCGCCGTGGTCACCGGTTCACTGAACCGGTTAACCGCCCTACCAGCAGCGGCATGAGCAGCACGGTGGAGTCGTTCAGCGGACCTAGGGTTCCGTCATCATCGATCGCGATCCATCACCGGAGACTCGTTGATCCGGTTTCCGTCGACGATTGTCATAGCGATTGCGATTCTTCGTCGTCGGTGATTGACGATGAGGATTGTGTTCTCACCTCGTCGTTCCGGCAACCTATGCCGTTCGATCTCAACCTCCCTCCACCAGATGACAACACCGGTGACGGCGGCGATTTCACTGCCGATGAGCTTCTAGCCACCACCTTGTGCCTCTGA 651 0.5515 MRHRVRNADPTTPNDAVPAPPPTQPTNPIQEPRFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEDAARAYDAAARSFRGPRAKTNFPFSSSNPSQIAIYNRGFENRRGHRFTEPVNRPTSSGMSSTVESFSGPRVPSSSIAIHHRRLVDPVSVDDCHSDCDSSSSVIDDEDCVLTSSFRQPMPFDLNLPPPDDNTGDGGDFTADELLATTLCL* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1369 216 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700|GO:0006355
Lan9g1369 216 Gene3D AP2/ERF domain 33 92 IPR036955 GO:0003700|GO:0006355
Lan9g1369 216 MobiDBLite consensus disorder prediction 1 38 - -
Lan9g1369 216 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 29 189 - -
Lan9g1369 216 Pfam AP2 domain 32 82 IPR001471 GO:0003700|GO:0006355
Lan9g1369 216 SUPERFAMILY DNA-binding domain 33 92 IPR016177 GO:0003677
Lan9g1369 216 MobiDBLite consensus disorder prediction 113 133 - -
Lan9g1369 216 SMART rav1_2 33 96 IPR001471 GO:0003700|GO:0006355
Lan9g1369 216 CDD AP2 32 90 IPR001471 GO:0003700|GO:0006355
Lan9g1369 216 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 29 189 - -
Lan9g1369 216 MobiDBLite consensus disorder prediction 14 28 - -
Lan9g1369 216 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Lan9g1369 216 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700|GO:0006355
Lan9g1369 216 MobiDBLite consensus disorder prediction 117 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1369 Lan-Chr9 20768817 20770040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1369 29 216 AP2-EREBP Transcription Factor Family AT1G50640 51.196 3.07e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lan9g1369 AP2 8.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1369 K09286 - cpap:110808864 173.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1180 2 22955482 22956719 Lan9g1369 9 20768817 20770040 LSH