Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1368 ATGGAAAATTCCGACGACAACGAACGCGAACAGAAGAAGCCTCACCGCACGCCCAGAAACTCTACCAATAACAAAAACGCTGATGCAGGAGTCGTAGAGGTCCATAAGCAGCTTGTTCAACAGACAAACACCCAAAAACATAATTTGCAAGATCTTGAAGAAAAAATTAAAAATTTAAAAGGAAGACAAGAGGCTTATGATGACTTGTTAATTGCGGTGAACCAATGCTGGATTCAGTTAGTTAGTGATCTAGTTCTTCTTGGTATACAAGCTGGGAGAGGCCCGGATGCATTGAAAACTTTGGATAACCCTGAGAATCCTCAAGGTTCACTTCACTTGTGTCCTGTGGAGGATATATTTCTTCGCAATTTAATCCAGAAGGATTCTGTTGAAGGAACCAGTAATGATGAGATTGTTGATTATGTTGAGGAAGCCCTTGCCTTGCGTCAGTCATCTACATTAGAGTTGTTGAAACTCCTTCAAGATACTATTGATTCTCAGACAGAAAAAATTGGCAGTATAGCCCAGGTTTTGCATGGAGTTTTATCTTCAGAAGATCTTATCATCCAAATGTCTAAGGTTGATGATATAATGAAAGAGGATGCATATAATTTACGTGAAGCGATTGATGCTCTTAATGCGATGCATAAAGAGTATGCTGTTGGTATTCAAAATTATATTAGTGGGAACTTACAAGATCAAGCTGACATTAAACACCTTGCAGGTGAGCTTGATGAGAGCTTGACTGAACTTGAAGAGTGTAGAAGGAAACTAGTCAATCTGAAAATGCAAAAGGATTCAGCACCAGGGATGCGTTCCCACAATTCAAATGCAGTGAATGGGAACCTGTCTCCTGAAAAACCTGCAGAGAGGACTACGAGTTCACGTGAGTTGAAGGATTCAATTGAAGAATCAAAGATAGTGGTTGCTGGTCGTCTTTCTGAGCTTCAAGATGCCCAGGAAGACAATCAAATTTTGACAAAGCAATTACAAGATCTTCAGAATGAACTGAATGATGACAAATATGTACGCTCTTCCCGAATATACTCTTTGGCAAATGATCAACTTCAACATTGGAATACTGAATTGGATCGGTATAAAATGTTGACAGAGTCTCTGAAGGCTGGAAGTGTTCATGTTGCAAAATGGGAGAAAGAACTGAATTTGAAATTGGAGTCTGCTGATACTGCAAGGCATACCAGGGGCAACTCTGACTATAAGACTGAAGAGCTAGAGCTTCAGTTGCAGAAGTGTATTATGGAAAAGAATGATCTTGAAATGAAGATGGAAGAGGCTATACAGGATACTGGGAGAAAGGATATCAAATCCGAGTTTCATGTGATGTCCACTGCTTTATCTAATGAAATGGGGATGATGGATGCTCAATTGAAGCGATGGAAGGATACAGCTCAGGAGGCTGTATTTGTACGTGAAAAAGTGAATCATTTAAGAGCATATTTGAGTGCGAAGACAAGCGAACTTACAAGCCTTGTAAACAGATCTGCTGAACAGGATTTGGAAATCAAGTCTTTAAAGGCATTGATCGAAAAGTTAGAGTGGGATAATATGGAGTTAGGACTCATTGTTGAAATGCACGGTGATGAGAATTATGAAAAAAGCACTATAGCGGAAATTAGAGAATCTGAAAGAAATGCACGCTCCCAAGCTGAAGGACTGCAAAATGCTTTAGATGAACATAGTCTAGTATTGAGAGTAAAAGCTGCTAATGAAGTTGAAGCTGCTTGTGAACAAAGGCTGTCTGCTGCAGAAGCTGAACTAGAGGACCTGAAGGCCCAGCTAAATGCATCTGAGAGAGATGTTTTGGAGTTGAGTGAGGCTATTAGAGTTAAAGATACTGAGGCAGAGACATATATGTCTGAAATTGAGACTATTGGTCAAGCATACGAAGATATGCAGACACAGAACCAACATCTGTTGCAGATGGTAGCTGAGAGAGATGACTATAATATTAAGCTTGTATCAGAGAGCGTCAAGACAAAACAGGCACATAGCACTTCACTGTCTGAGAAGCAGGCCTTGGCAAAGCAACTTCAGCAAATTAATGCTTCATTAGAAAATTCAAAGACGAGGATTGTACACAGTGAAGAGCAGATGAAAGCTCTTCTATTGGAAGCCATCAAATCTACTCAAGAGGATAAACACCTTGCAGTTGCCCTGGAATTTGCGAAGTGGGAATTGGCTGATGCTGAGAAGGAGTTGAAGTTTCTCAAGTCTAATGTTTCGTCTTCAGAGAAAGAACACAATCAAATTCAGAAAGATGTGGAAGTTATGGAAATGGAATTGGAAAGTGAAAGGAGTTCACGGAAGAAGCTTGAGGATGAACTCATGGAAATGAACAGACAAATTGCTGAGCTGAGCTCTGAAACTGGAGAAGAAGCAGTACAAAAGCTCGAAGATGAATTAAAGGTTTGCAAGAACATGATCAAGTGTACTGTCTGTTATGATCGTCTGAAGGAGGTTGTGATTGTGAAGTGCTGTCATATGTTCTGCAGTCAATGCATTCAAAGAAATCTGGAGCTCCGTCACCGCAAGTGTCCTGCTTGTGGAACCGCATTTGGTCAGAGTGATGTTCGCCTTGTTAAGATATGA 2610 0.4034 MENSDDNEREQKKPHRTPRNSTNNKNADAGVVEVHKQLVQQTNTQKHNLQDLEEKIKNLKGRQEAYDDLLIAVNQCWIQLVSDLVLLGIQAGRGPDALKTLDNPENPQGSLHLCPVEDIFLRNLIQKDSVEGTSNDEIVDYVEEALALRQSSTLELLKLLQDTIDSQTEKIGSIAQVLHGVLSSEDLIIQMSKVDDIMKEDAYNLREAIDALNAMHKEYAVGIQNYISGNLQDQADIKHLAGELDESLTELEECRRKLVNLKMQKDSAPGMRSHNSNAVNGNLSPEKPAERTTSSRELKDSIEESKIVVAGRLSELQDAQEDNQILTKQLQDLQNELNDDKYVRSSRIYSLANDQLQHWNTELDRYKMLTESLKAGSVHVAKWEKELNLKLESADTARHTRGNSDYKTEELELQLQKCIMEKNDLEMKMEEAIQDTGRKDIKSEFHVMSTALSNEMGMMDAQLKRWKDTAQEAVFVREKVNHLRAYLSAKTSELTSLVNRSAEQDLEIKSLKALIEKLEWDNMELGLIVEMHGDENYEKSTIAEIRESERNARSQAEGLQNALDEHSLVLRVKAANEVEAACEQRLSAAEAELEDLKAQLNASERDVLELSEAIRVKDTEAETYMSEIETIGQAYEDMQTQNQHLLQMVAERDDYNIKLVSESVKTKQAHSTSLSEKQALAKQLQQINASLENSKTRIVHSEEQMKALLLEAIKSTQEDKHLAVALEFAKWELADAEKELKFLKSNVSSSEKEHNQIQKDVEVMEMELESERSSRKKLEDELMEMNRQIAELSSETGEEAVQKLEDELKVCKNMIKCTVCYDRLKEVVIVKCCHMFCSQCIQRNLELRHRKCPACGTAFGQSDVRLVKI* 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1368 869 Pfam Zinc finger, C3HC4 type (RING finger) 816 855 - -
Lan9g1368 869 Coils Coil 237 264 - -
Lan9g1368 869 Coils Coil 35 69 - -
Lan9g1368 869 MobiDBLite consensus disorder prediction 264 299 - -
Lan9g1368 869 CDD RING-HC_BRE1_like 815 856 - -
Lan9g1368 869 MobiDBLite consensus disorder prediction 269 289 - -
Lan9g1368 869 SUPERFAMILY RING/U-box 816 860 - -
Lan9g1368 869 Coils Coil 674 711 - -
Lan9g1368 869 Coils Coil 572 613 - -
Lan9g1368 869 Coils Coil 726 795 - -
Lan9g1368 869 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 801 868 IPR013083 -
Lan9g1368 869 Coils Coil 542 562 - -
Lan9g1368 869 Coils Coil 408 435 - -
Lan9g1368 869 SMART ring_2 817 855 IPR001841 -
Lan9g1368 869 ProSitePatterns Zinc finger RING-type signature. 832 841 IPR017907 -
Lan9g1368 869 PANTHER RING FINGER PROTEIN-RELATED 13 869 IPR013956 GO:0004842|GO:0010390
Lan9g1368 869 MobiDBLite consensus disorder prediction 1 17 - -
Lan9g1368 869 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BRE1 13 869 - -
Lan9g1368 869 Coils Coil 316 336 - -
Lan9g1368 869 MobiDBLite consensus disorder prediction 1 29 - -
Lan9g1368 869 ProSiteProfiles Zinc finger RING-type profile. 817 855 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1368 Lan-Chr9 20748762 20759498 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1368 784 864 RAD5 or RAD16-like Gene Family AT5G05130 25.556 8.79e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1368 K10696 - gmx:100796610 1201.42