Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1364 ATGAAACAAGATGTTAGGTTTTTAGAGCAATGTGAGAAGGACAAGGCTCGTGTGCTGGTTCATTGCATGTCAGGAAAGAATCGGTCTCCAGCTATTGTGATTGCATACTTGATGAAGTCCAAAGGATGGAGACTTGCACAGTGTTATCAGTGGGTAAAAGAACGGAGACCGTCTGTTGAATTAACTGAAGGTGTATACCAGCAACTGCAGGAGTTAGAGCACAAGATCTTTGGATCAAACAATGGTGGAAGCTCAATGCTGCCCGGTTTTCCACCTGCAAGTTCAATTAGCTTTGGCTTCCCAAAGATCAATGATTCACCTCCGCTTCCTGCCTTCGGCGGTGTTGGAACTAATTCAATTTTCGCCCGACCACCCCTAGACTTCGCTCCAACCACATTTACATTCGGAGCTGGTCCAGTGCAGAATAGTGCAACTGGAAGCACATTTACTGCAAATCCACCTAACAATCCACATGGTTCTGATATCCAAATGGATGGTTCTTGA 504 0.4524 MKQDVRFLEQCEKDKARVLVHCMSGKNRSPAIVIAYLMKSKGWRLAQCYQWVKERRPSVELTEGVYQQLQELEHKIFGSNNGGSSMLPGFPPASSISFGFPKINDSPPLPAFGGVGTNSIFARPPLDFAPTTFTFGAGPVQNSATGSTFTANPPNNPHGSDIQMDGS* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1364 167 Gene3D Protein tyrosine phosphatase superfamily 1 86 IPR029021 -
Lan9g1364 167 PANTHER PROTEIN-TYROSINE-PHOSPHATASE IBR5 5 167 - -
Lan9g1364 167 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 1 67 IPR000387 GO:0016311|GO:0016791
Lan9g1364 167 MobiDBLite consensus disorder prediction 139 167 - -
Lan9g1364 167 Pfam Dual specificity phosphatase, catalytic domain 3 74 IPR000340 GO:0008138|GO:0016311
Lan9g1364 167 ProSitePatterns Tyrosine specific protein phosphatases active site. 20 30 IPR016130 GO:0016311|GO:0016791
Lan9g1364 167 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 5 80 IPR029021 -
Lan9g1364 167 ProSiteProfiles Dual specificity protein phosphatase domain profile. 1 78 IPR020422 GO:0006470|GO:0008138
Lan9g1364 167 PANTHER PROTEIN-TYROSINE-PHOSPHATASE IBR5 5 167 IPR044212 GO:0009734|GO:0009738|GO:0033549|GO:0043407
Lan9g1364 167 SMART dsp_5 1 75 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1364 Lan-Chr9 20731491 20732980 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1364 5 62 Protein tyrosine phosphatase (PTP) family AT2G04550 74.138 1.46e-29 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1364 K04459 - gmx:100808721 239.965