Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1363 ATGAGGAAAAGAGAAAGGGAAAACCCTTGTGCGGTGTGTGGCCACTATCACAAGTACGAGGAAGGTGAAGTGTGTTCAATTTGCGGCCACCGGTTAACGGTCGGAGAGAAAACTTCGGTGCAAGTTAGCGCCTTCCCGTCGGTGATCTTGCCGGAGTTTCTTTACCTCGGAAGCTACGACAATGCTTCACGCTCCGAGCTTCTCAAGACTCAGGGAATCACTCGCATCCTAAATGTAAGGGCGACTGTTCCTTCTTGTCAAAATCTCTACAAGAACTCATTTACCTATCACTGCCTCCCAGATGACAAAACTTTGCCATTTGATGAAGGAATTCGGTTTTTAGAGCAATGTGAGAAGGACAAGGCTCGTGTGCTGGTTCATTGCATGTCAGGAAAGAATCGGTCTCCAGCTATTGTGATTGCATACTTGATGAAGTCCAAAGGATGGAGACTTGCACAGTGTTATCAGTGGGTAAAAGAACGGAGACCGTCTGTTGAATTAACTGAAGGTGTATACCAGCAACTGCAGGAGTTAGAGCACAAGATCTTTGGATCAAACAATGGTGGAAGCTCAATGCTGCCCGGTTTTCCACCTGCAAGTTCAATTAGCTTTGGCTTCCCAAAGATCAATGATTCACCTCCGCTTCCTGCCTTCGGCGGTGTTGGAACTAATTCAATTTTCGCCCGACCACCCCTAGACTTCGCTCCAACCACATTTACATTCGGAGCTGGTCCAGTGCAGAATAGTGCAACTGGAAGCACATTTACTGCAAATCCACCTAACAATCCACATGGTTCTGATATCCAAATGGATGGTTCTTGA 822 0.4672 MRKRERENPCAVCGHYHKYEEGEVCSICGHRLTVGEKTSVQVSAFPSVILPEFLYLGSYDNASRSELLKTQGITRILNVRATVPSCQNLYKNSFTYHCLPDDKTLPFDEGIRFLEQCEKDKARVLVHCMSGKNRSPAIVIAYLMKSKGWRLAQCYQWVKERRPSVELTEGVYQQLQELEHKIFGSNNGGSSMLPGFPPASSISFGFPKINDSPPLPAFGGVGTNSIFARPPLDFAPTTFTFGAGPVQNSATGSTFTANPPNNPHGSDIQMDGS* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1363 273 ProSitePatterns Tyrosine specific protein phosphatases active site. 126 136 IPR016130 GO:0016311|GO:0016791
Lan9g1363 273 ProSiteProfiles Dual specificity protein phosphatase domain profile. 45 184 IPR020422 GO:0006470|GO:0008138
Lan9g1363 273 CDD DSP_plant_IBR5-like 46 177 - -
Lan9g1363 273 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 46 186 IPR029021 -
Lan9g1363 273 SMART dsp_5 45 181 IPR020422 GO:0006470|GO:0008138
Lan9g1363 273 MobiDBLite consensus disorder prediction 250 273 - -
Lan9g1363 273 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 105 173 IPR000387 GO:0016311|GO:0016791
Lan9g1363 273 Pfam Dual specificity phosphatase, catalytic domain 54 180 IPR000340 GO:0008138|GO:0016311
Lan9g1363 273 PANTHER PROTEIN-TYROSINE-PHOSPHATASE IBR5 1 273 IPR044212 GO:0009734|GO:0009738|GO:0033549|GO:0043407
Lan9g1363 273 Gene3D Protein tyrosine phosphatase superfamily 30 186 IPR029021 -
Lan9g1363 273 PANTHER PROTEIN-TYROSINE-PHOSPHATASE IBR5 1 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1363 Lan-Chr9 20727057 20730936 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1363 1 168 Protein tyrosine phosphatase (PTP) family AT2G04550 73.256 2.33e-93 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1363 K04459 - gmx:100808721 445.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1173 2 22908638 22912414 Lan9g1363 9 20727057 20730936 LSH
Lan11g0209 11 1340114 1344931 Lan9g1363 9 20727057 20730936 LSH