Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1350 ATGGTCAGAAAAAGGATTGTACATCAATCGAATCATCCATTTGATTCTTACCCTTTTGAAGCATACATCTCTGGTTCATGGCAAGATGTGGAGTTCATAACAATTGAGTCTGGAACTTTGTACATGCATTTAAAAAGTAAGCCCCCTGTGGCTATGGAGAAAGGCCCATTTTCGGATATTAGGGTAAAGTCGAGGAAAGCCGTTTCTTCAGATTGCTCCAGTTTTTTACGGCATGGAATCGACATATCTGTGCTGTCACCCCCCAAGCAGACTGATAATTCTGATGGATTAAATCTCAAGCCTGTATGGCTTGATGCTAGAATAAGTTCTATACAGAGAAAGCCCCATAATTCTGAGTGTCAATGCCAGTTTTATGTGAACTTCTATGTCAATCAAGGTTCAATTGGTGCAGAGCTAAGAACTCTTAGAAAGGAGGTCAAGGTATTTGGAATTAATCAAATCTCCATCCTCCAAAAGCTTGAACATAGTCCTTGTGAAAACGAGTTCTACCGTTGGGCTTCATCCGAGGACTGTCCTACATTACCAAATACAAAATTACTTCTGGGAAAATTCTTAGCTGACATTTCATGGTTAGTGGTCACATCAGTTGTGAAGAAGGTTCAATTCTGTGTGCGACCTGTTGAAGACAAGCTTGTCTATCAAATTATGGAAAGTGAAGTTGCTAGCTCTTCATTGAACACCGAGTCTCCAATAAATGTTGTGAGTTTCACATTTGACGATAAAGATGGCCTGTTAGTATCTAGTGTTTCTCAAGTTGTTACTGCTAAGCCCAAGACGATTGAATATGCACATGGATCTCATGAAGATAAAGTCTCTCCATCATCTTATAATGTTGAGGGCTTACGGCGTTCCAAACGCCGGCATGTTCAGCCTGAGCGTTACATTGGATGCGATGATGTTACTGAGTTTGATGTTGGTTCATTTAGAACCCAGCCACCAATGAAGATAGACACAGCGGCGAAAGAGGATGATGAATTGTCAATGCCATTATCATGCCTGTTTGGTTTGAAACAAAAGCCTCTACTTGAGGATCTTCGTGATTTTCAAAAGGTCAGCAAGATGAATACCTGTGGGGAGCTTCTAGTGTACAATAGGAGGAGGAGGCCTAAAACCAAGAAGCTAAAGTCAATTCGTAGTGATCCAATTGAACAGGAAAATCCACTTGCTATTGTTCCTCTTCCTGATCAAGTAGATCCAGTAAGTGTTAAGCATTGTGATCTGAATGACAAGGTTACTGGAAGTCATGGACGTGAATCTTCTGAAACTCCTTTAAAAAATTATCATCATCATCTGGCAAGTAGCTCTAAACAAAGGTGGAAAAATGTAAGTCTGTTAACATTTGATCCAAATCCTAATGCTGCACAAGCAGATGATCCAGAAAATATTGACGGCTTTTCTTCAAGAAGCCACTTTGGTTACAGCACATCCAAGATATTGAAGAAACATTCATTTTTTATGGATGATATGGACCTCGGAGGAACTAAATGGGAAGGGATAAGTTCCAGCAAAGGAGCTCAAGAGAAAACATATTATCCGACATATTCAAGAAGTAGAAATCATGAAGAAGAAAGAAGATATAAAGACAGAAGCTTAAATGCAACTGCCTACAAGGATTTGATAAATTCATACTTGAGGGATATCAATACAAAACCAACAACAGAAGAACCACCTGCCACTGACCAGTGGAAGCAATTCCAGGAAACAAGTGGCTTTAGTGAAAAGAAGGAAACAGGAACAGAAATATCCGAGGGAGAGGATGAGAATGATGAAGAATCTGAAATTGAGATGTTGTGGCGAGAAATGGAAGTGTCATTGGCATCAACTTATCTTGAGGACGCAGAGGGCTCAAATGCTGGCAATCCTGCTGAGACCATGGAAAAACAGAATCAAGGATGTCCACATGACGAAGAATATAAAAGAATGGATGATGAAATTGGAATTTACTGCCGCGTATGTGGCCATGTGTACGTCGACATTAAAGACATGTTTCCACCCTTTCTTGAACGGACAGAGTGGCACCATGAGGAAAAGCAGTGCATTGGAGAAGATCCAGATTTAGAGGTAGAAGCTGATGAGCATGATGATTATCATCTTTTCTCGACCGACTCTCCTTCTGAAGATGAACCTAAAACTGAAGAAAGTGAAAACGTGTGGGCATTAATTCCTGAACTTAGACTGAAGTTGCATGCCCACCAAAAGAAGGCTTTTGAGTTCCTTTGGCAAAATATTGCAGGGTCTATGGAACCATCAGTTCTGGAAGCACATTCCAAAAGAACAGGTGGCTGTGTGATATCTCATTCTCCCGGAGCTGGCAAAACTTTTCTCATTATTGCTTTTCTTGTAAGTTACTTAAAGTTGTTCCCAGGGAAGAGGCCTCTGGTTCTAGCTCCTAAGACAACACTGTATACCTGGTATAAGGAATTCATCAAGTGGAAGATTCCAATACCGGTGTATTTGATTCATGGTCGCAGAACCTACAGGGTATTCAAGCAGAAACACTCGATGGTTTTTCCTGGAATTCCCAAGCCCACTGAGGATGTCAAGCATGTTTTGGATTGCCTGGAGAAGATAAAAAATTGGCATTCACAACCGAGTGTTCTAATCATGGGTTATACTTCCTTTTTGACATTGATGCGAGAGGATTCAAAGTATGCACATAGGAAGTACATGGCAAATGTATTGAGGGAAAGTCCTGGGATGCTGATACTGGATGAAGGGCACAATCCTAGGAGCACTAAGTCACGGTTGAGAAAAGTTTTGATGAAAGTACACACGGAATTGAGAATATTACTTTCTGGTACATTGTTTCAAAACAACTTTTGTGAATACTTCAACACTCTCTGCTTGGCTAGACCAAAGTTTGTTCAGGAAGTGCTGAAAGCATTAGACCCAAAATACAAGAAGAAAAAGAAGAAAGGAGCCAATTATGAGTCTCGTGCTAGAAAGTTATTCTTAGATACAATTGCTAAGAAAATTGACTCAAATGATAATGAGGAGAGGATGCAAGGTCTAAACATGTTGAGAAATCTAACTCATGGTTTTATTGATGTTTATGAAGGCGGGAGTTCTGATGGTCTGCCTGGTTTAGAAATTTACACACTGCTAATGAATCCAACCGAAACACAGCACGAGATGCTGCATACATTGCACGAGAAAATGGCTCAGTGCAATGGGTACCCACTGGAGATAGAGCTTTTGATAACTCTCGGATCTATACATCCTTGGTTGATCAAAACAGCTGTGTGTGCTGAGAAGTTTTTCAGTAAAGAGCAATTGAGCGACCTAGAGAAATGCAAGTTCGATTTGAAAATTGGGTCAAAAGTAAAATTTGTTTTGAGCCTTATCTATCGTGTTGTCAAGAATGAGAAGGTCCTTATCTTTTGCCACAACATTGCACCTGTGAAATTGTTCCTAGAATATTTTGAGAGGTACTTTAGATGGCAAAGAGGTAGGGAAGTTTTGGTATTGACCGGAGAACTCGAGCTATTTGAACGTGGCAGAGTGATGGATAAGTTTGAGGAGCCTGGTGGAGTGTCAAAGGTACTCCTTGCTTCAATTACAGCTTGTGCCGAAGGCATTAGTTTGACTGCAGCTTCTCGGGTAATCATGTTGGACTCAGAGTGGAATCCATCTAAGACAAAGCAGGCTATTGCCCGAGCTTTTCGGCCTGGTCAGCAAAAAATGGTTTATGTGTATCAGCTGTTGGTATCAGGTTCACTAGAGGAGGATAAGTACAAAAGAACCACTTGGAAAGAGTGGGTATCAAACATGATTTTCAGTGAGGATTTTGTGGAGGATCCTTCCCAGTGGCAGGCTAATAAGCTTGAAGATGAAATTCTGCGCGAAATGGTAGAGGAAGACAAGTCTAAATCATTCCATATGATATTGAAGAATGAAAAAGCTTCAACAAACAGAGAGGCCCATCCAAAATTAAAGATTGCAGCAGGACTTCAATAA 3978 0.406 MVRKRIVHQSNHPFDSYPFEAYISGSWQDVEFITIESGTLYMHLKSKPPVAMEKGPFSDIRVKSRKAVSSDCSSFLRHGIDISVLSPPKQTDNSDGLNLKPVWLDARISSIQRKPHNSECQCQFYVNFYVNQGSIGAELRTLRKEVKVFGINQISILQKLEHSPCENEFYRWASSEDCPTLPNTKLLLGKFLADISWLVVTSVVKKVQFCVRPVEDKLVYQIMESEVASSSLNTESPINVVSFTFDDKDGLLVSSVSQVVTAKPKTIEYAHGSHEDKVSPSSYNVEGLRRSKRRHVQPERYIGCDDVTEFDVGSFRTQPPMKIDTAAKEDDELSMPLSCLFGLKQKPLLEDLRDFQKVSKMNTCGELLVYNRRRRPKTKKLKSIRSDPIEQENPLAIVPLPDQVDPVSVKHCDLNDKVTGSHGRESSETPLKNYHHHLASSSKQRWKNVSLLTFDPNPNAAQADDPENIDGFSSRSHFGYSTSKILKKHSFFMDDMDLGGTKWEGISSSKGAQEKTYYPTYSRSRNHEEERRYKDRSLNATAYKDLINSYLRDINTKPTTEEPPATDQWKQFQETSGFSEKKETGTEISEGEDENDEESEIEMLWREMEVSLASTYLEDAEGSNAGNPAETMEKQNQGCPHDEEYKRMDDEIGIYCRVCGHVYVDIKDMFPPFLERTEWHHEEKQCIGEDPDLEVEADEHDDYHLFSTDSPSEDEPKTEESENVWALIPELRLKLHAHQKKAFEFLWQNIAGSMEPSVLEAHSKRTGGCVISHSPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWKIPIPVYLIHGRRTYRVFKQKHSMVFPGIPKPTEDVKHVLDCLEKIKNWHSQPSVLIMGYTSFLTLMREDSKYAHRKYMANVLRESPGMLILDEGHNPRSTKSRLRKVLMKVHTELRILLSGTLFQNNFCEYFNTLCLARPKFVQEVLKALDPKYKKKKKKGANYESRARKLFLDTIAKKIDSNDNEERMQGLNMLRNLTHGFIDVYEGGSSDGLPGLEIYTLLMNPTETQHEMLHTLHEKMAQCNGYPLEIELLITLGSIHPWLIKTAVCAEKFFSKEQLSDLEKCKFDLKIGSKVKFVLSLIYRVVKNEKVLIFCHNIAPVKLFLEYFERYFRWQRGREVLVLTGELELFERGRVMDKFEEPGGVSKVLLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLVSGSLEEDKYKRTTWKEWVSNMIFSEDFVEDPSQWQANKLEDEILREMVEEDKSKSFHMILKNEKASTNREAHPKLKIAAGLQ* 1326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1350 1325 Pfam Helicase conserved C-terminal domain 1114 1230 IPR001650 -
Lan9g1350 1325 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 19 1310 - -
Lan9g1350 1325 Gene3D - 1035 1319 IPR027417 -
Lan9g1350 1325 CDD DEXHc_ATRX-like 735 961 - -
Lan9g1350 1325 MobiDBLite consensus disorder prediction 555 600 - -
Lan9g1350 1325 Gene3D - 706 1000 IPR038718 -
Lan9g1350 1325 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 719 980 IPR027417 -
Lan9g1350 1325 MobiDBLite consensus disorder prediction 555 575 - -
Lan9g1350 1325 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1117 1283 IPR001650 -
Lan9g1350 1325 Pfam SNF2-related domain 744 996 IPR000330 GO:0005524|GO:0140658
Lan9g1350 1325 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1031 1294 IPR027417 -
Lan9g1350 1325 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 760 960 IPR014001 -
Lan9g1350 1325 SMART helicmild6 1146 1231 IPR001650 -
Lan9g1350 1325 SMART ultradead3 731 965 IPR014001 -
Lan9g1350 1325 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 19 1310 IPR044567 GO:0080188
Lan9g1350 1325 CDD SF2_C_SNF 1106 1242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1350 Lan-Chr9 20635384 20645928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1350 1110 1249 RAD5 or RAD16-like Gene Family AT5G43530 34.965 1.28e-12 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lan9g1350 SNF2_N 1.6e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1350 K10875 - gmx:100811703 1771.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0229 11 1450170 1456196 Lan9g1350 9 20635384 20645928 LSH