Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1346 ATGGCTAGAGGATTGAAGAAACATTTGAAGAGGCTCAATGCCCCAAAGCATTGGATGCTTGACAAACTTGGTGGTGCTTTTGCTCCAAAACCATCATCTGGACCACACAAGTCTAGGGAATGTCTTCCACTCATTTTGATATTGCGAAACAGGCTGAAATATGCCCTGACATACCGTGAAGTCATTGCTATTCTGATGCAGCGCCATATCCTTGTTGATGGCAAAGTCAGGACTGATAAGACATATCCTTCTGGTTTCATGGATGTTGTTTCTATTCCTAAAACCAATGAGAATTTCCGTCTGCTGTATGACACCAAAGGTCGTTTCCGTCTCCACTCTGTCAGGGATGATGAGGCCAAGTTTAAGCTCAGTAAGGTTCGATCAGTGCGGTTTGGTGATAAAGGTATCCCATACCTGAACACCTATGATGGTCGCACCATCCGCTATCCTGACCCTGTCATCAAGGCAAACGACACCATCAAGTTGGACTTGGAGGAGAACAAGATTGTCGACTTCATCAAGTTTGATGTCGGTAATGTTGTGATGGTCACTGGTGGAAGGAATAGGGGACGTGTTGGTGTGATCAAGAACAGGGAGAAGCATAAGGGAACCTTTGAGACAGTCCACATCCAGGATGCCACAGGACATGAATTCGCAACTCGTCTGGCCAATGTGTTCACCATTGGCAAGGGTACTAAGCCATGGATCTCTCTTCCCAAGGGTAAGGGTATTAAGCTATCAATCATTGAGGAAGCTAGGAAAAGGGTTGCTGCTCAACTACCAACTGCTGCTTAA 795 0.4579 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHILVDGKVRTDKTYPSGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLSKVRSVRFGDKGIPYLNTYDGRTIRYPDPVIKANDTIKLDLEENKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGTFETVHIQDATGHEFATRLANVFTIGKGTKPWISLPKGKGIKLSIIEEARKRVAAQLPTAA* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1346 264 Pfam Ribosomal family S4e 95 169 IPR013845 -
Lan9g1346 264 Pfam 40S ribosomal protein S4 C-terminus 212 258 IPR032277 -
Lan9g1346 264 CDD KOW_RPS4 175 229 IPR041982 -
Lan9g1346 264 ProSitePatterns Ribosomal protein S4e signature. 8 22 IPR018199 -
Lan9g1346 264 Hamap 30S ribosomal protein S4e [rps4e]. 7 238 IPR000876 GO:0003735|GO:0005840|GO:0006412
Lan9g1346 264 Pfam S4 domain 47 90 IPR002942 GO:0003723
Lan9g1346 264 PIRSF RPS4a_RPS4e 1 241 IPR000876 GO:0003735|GO:0005840|GO:0006412
Lan9g1346 264 SMART kow_9 174 201 IPR005824 -
Lan9g1346 264 Gene3D - 122 172 IPR038237 -
Lan9g1346 264 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 221 264 IPR000876 GO:0003735|GO:0005840|GO:0006412
Lan9g1346 264 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 2 221 IPR000876 GO:0003735|GO:0005840|GO:0006412
Lan9g1346 264 SMART s4_6 42 106 IPR002942 GO:0003723
Lan9g1346 264 Gene3D - 1 117 IPR036986 GO:0003723
Lan9g1346 264 Pfam KOW motif 177 210 IPR005824 -
Lan9g1346 264 PANTHER 40S RIBOSOMAL PROTEIN S4 2 221 - -
Lan9g1346 264 PANTHER 40S RIBOSOMAL PROTEIN S4 221 264 - -
Lan9g1346 264 Gene3D - 175 245 IPR014722 -
Lan9g1346 264 CDD S4 51 112 - -
Lan9g1346 264 Pfam RS4NT (NUC023) domain 3 39 IPR013843 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1346 Lan-Chr9 20609811 20611917 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1346 1 259 Cytoplasmic Ribosomal Protein Gene Family AT5G58420 90.347 0.0 497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1346 K02987 - gmx:100795220 489.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1157 2 22816676 22818670 Lan9g1346 9 20609811 20611917 LSH
Lan11g0231 11 1473156 1475406 Lan9g1346 9 20609811 20611917 LSH