Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1344 ATGTCAAGTCACGACGCTGAAATATTCAACTGGCACCACGACGGAGGCGCGATCGACGACGAAAGCCTCGAAATCCGTGGCCGGAAATTCTTCTTCCTCCTCGTTCTCTTCGTCATTGTCCTCTTCACCATCGTTTTCTTCCTCTACGTCCGCTGGATCTGCCGTCCCCAAGCATTCTCTTCATTTCGAAGACGCCACGCGCTGCAAACGCCGCCGTCGTCTCAAGGACTCGCAGCCGAAACGATAAAGAAACTGCCGATTGTGTTGCACCAGACGAGTTCGGATCAGGATAGCGCGTGTGAGTGTTGCATATGCTTAAGCGCGTTCAGAGATGGTGAGAAGGTGAAGGTGTTACCGGGTTGTGAGCATTGGTTTCATTGCGAGTGTGTTGATAAGTGGCTTATGAATCATTCTAATTGTCCTCTTTGTAGAGCTTCTCTCAAGTTCGATGATTTTTCGTTTCCCACTATTCTCATTCAAGAACCACCAATTAGACACCATTAA 504 0.4881 MSSHDAEIFNWHHDGGAIDDESLEIRGRKFFFLLVLFVIVLFTIVFFLYVRWICRPQAFSSFRRRHALQTPPSSQGLAAETIKKLPIVLHQTSSDQDSACECCICLSAFRDGEKVKVLPGCEHWFHCECVDKWLMNHSNCPLCRASLKFDDFSFPTILIQEPPIRHH* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1344 167 PANTHER RING-H2 FINGER PROTEIN ATL66 2 153 - -
Lan9g1344 167 SUPERFAMILY RING/U-box 81 150 - -
Lan9g1344 167 Pfam Ring finger domain 101 144 IPR001841 -
Lan9g1344 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 149 IPR013083 -
Lan9g1344 167 SMART ring_2 102 143 IPR001841 -
Lan9g1344 167 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 2 153 IPR044675 -
Lan9g1344 167 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1344 Lan-Chr9 20596499 20597407 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1344 2 153 C3H Transcription Factor Family AT3G11110 38.961 3.36e-29 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1344 - - aip:107623622 185.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1151 2 22772688 22773387 Lan9g1344 9 20596499 20597407 LSH
Lan15g0108 15 744079 744886 Lan9g1344 9 20596499 20597407 PCT
Lan3g0964 3 21282268 21283021 Lan9g1344 9 20596499 20597407 PCT
Lan9g1344 9 20596499 20597407 Lan15g0108 15 744079 744886 PCT
Lan9g1344 9 20596499 20597407 Lan3g0964 3 21282268 21283021 PCT