Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1343 ATGATGAACTCCACTGCCATATTCAATGGCGTAGATCGCGTGAAGGGTTCATGGACACCGCAAGAAGACGAAACGCTGTTGAGGCTTGTGGCACAACACGGCCCACGTAACTGGACGGTGATCAGCGCTGGGATCTCTGGGCGTTCCAGCAAGTCGTGTCGTCTAAGGTGGTGTAATCAGCTGAGTCCCGACGTGCAGCACCGTTCTTTTACCCCAGCGGAGGACAGTATCATCATCAATGCTCATGCACTTTACGGTAACAAGTGGGCCACGATTTCAAGACTCTTACCAGGACGAACTGATAATGCTATAAAGAATCATTGGAATTCAACCCTCCGCCGCCATGGTTTGGCACAGGGATACTCTTCCTCCGAGTCCGACATCGTGGTGAACAAGAAGCGCGTCACAAATGACTTTCTCATCCGTAGTTATCCTTCCAAGAGGCCTTATAGGGAGAATCATTTCCCAGAGAATAAGAAAGGTTTGGGTTCAGGTTTTGCTGAGAATATTCATAGTATTCCTGTTACGACGCCGTTGAGTCTATGGCCGCCGGGTGCGGCGGAGAAGGAAGAAGAGGAAGAAGAAGAAAGTGATGAAGTTGAAGGGAAGGGTGAAAAGGTGAATGGGCAAACTCACTTGAGGGAGATTATTCGACGCATGATCGCGGATGAGGTTAAGAGTTACATGGATGACTTGCGCCATCGTCATATTCATACTGGTTTAAAACTTCATCAATCACTTCCTAAGTAA 750 0.4827 MMNSTAIFNGVDRVKGSWTPQEDETLLRLVAQHGPRNWTVISAGISGRSSKSCRLRWCNQLSPDVQHRSFTPAEDSIIINAHALYGNKWATISRLLPGRTDNAIKNHWNSTLRRHGLAQGYSSSESDIVVNKKRVTNDFLIRSYPSKRPYRENHFPENKKGLGSGFAENIHSIPVTTPLSLWPPGAAEKEEEEEEESDEVEGKGEKVNGQTHLREIIRRMIADEVKSYMDDLRHRHIHTGLKLHQSLPK* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1343 249 Gene3D - 14 66 - -
Lan9g1343 249 CDD SANT 69 112 IPR001005 -
Lan9g1343 249 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 65 IPR017930 -
Lan9g1343 249 PANTHER MYB PROTEIN-RELATED 7 198 - -
Lan9g1343 249 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Lan9g1343 249 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 7 198 - -
Lan9g1343 249 MobiDBLite consensus disorder prediction 177 211 - -
Lan9g1343 249 ProSiteProfiles Myb-like domain profile. 10 61 IPR001005 -
Lan9g1343 249 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lan9g1343 249 CDD SANT 17 59 IPR001005 -
Lan9g1343 249 SMART sant 66 114 IPR001005 -
Lan9g1343 249 SMART sant 14 63 IPR001005 -
Lan9g1343 249 Pfam Myb-like DNA-binding domain 15 61 IPR001005 -
Lan9g1343 249 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Lan9g1343 249 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Lan9g1343 249 Gene3D - 69 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1343 Lan-Chr9 20587624 20588861 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1343 11 122 MYB Transcription Factor Family AT4G37260 67.857 3.54e-52 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan9g1343 Myb_DNA-binding 4.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1343 - - gmx:102661292 237.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0237 11 1507297 1508347 Lan9g1343 9 20587624 20588861 LSH