Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1339 ATGTGCAGCGGTTCAAAAAGTAATCTTTCTACCTCAAATCAAGTCATGGAAAGTGAGTTTCAGAAGATTTTGCTTGAATTCTCTGCTTTTGATGATGTTGAAGCTTTCAAAAGAGAAGTGGAAGAGAAAGGGTTGGATGTTAACGAGGCAGTCTTTTGGTATGGTAGAAGGATTGGATCAAAGAAGATGGGGTATGAAAAGAGGACCCCTCTCATGATTGCTTCTTTGTTTGGAAGCACTAGGGTGGTTAAGTATATTATTGAGATTGGCAATGTTGATGTGAACAAGGCTTGTGGTTCTGATGGGGTCACTGCTCTCCATTGTGCTGTTGCCGGGGGTTCCGAATCCTCACTTGAGATTGTCAAGCTCTTGCTTGATGCCGGGGCAGATGCCGATTGCCTTGATGCTATTGGCAACAAGCCTGTTACTCTGATTGCTCCTGCTTTTAATCCTTTGTCCAATTCGCGAAGGAAGGCTCTGGAGTTTTTTCTCCGAGGTGGGCAAGGTGATCAACAGTTATATGAGATTGAGCAACTGCCTGAGAAAAAAGAAGGGTCCGATAAGAAAGAGTATCCTGTTGATATATCGTTGCCTGACATAAACAATGGTGTATATGGAACAGATGACTTTAGGATGTATAGCTTTAAGGTGAAGCCATGCTCGAGGGCTTACTCCCATGATTGGACTGAGTGTCCATTTGTTCATCCAGGGGAGAATGCAAGGAGGAGAGACCCACGTAAATACCCTTATAGCTGTGTTCCTTGCCCAGAGTTTCGCAAGGGGACCTGCCAGAAGGGTGATTCCTGTGAGTATGCACATGGCGTTTTCGAGTCCTGGCTACATCCTGCTCAATACCGGACACGGCTTTGCAAGGATGAAACTGGCTGCAATAGAAAAGTCTGCTTCTTTGCTCACAAACCCGAAGAGTTACGTCCTGTATATGCCTCCACTGGTTCAGCTATGCCTTCACCAAAATCTTATGCAGCTAGTGCCCTTGACATGACATCAATGAGTCCATTGTCTCTTAGTTCGTCACTTCCTATGTCAACCGTTTCAACACCACCCATGTCTCCTTTGGCAGCTTCTTCATCTCCCAAAAGTGGAAACATGTGGCAGAACAAAATCAACTTCACCCCACCATCATTGCAGCTCCCGGGTAGCAGGCTGAAGGCTGCTTTGAGTGCCAGGGATCTCAATCTCGAGATGGAACTGCTCGGCCTAGAAAGTCCTAGCCATGCTCGTCAACAGCAGCAGCAGCAACAATTGAAAGAAGAGATTGCCAGAATCTCTTCCCCATCTTTCCGAAGCCGGATGGGTGATTTGAATCCAACTAACCTTGATGAACTGTTAGCATCTGCTGATGCTTCTGTATTGTCTCAGTTACATGGACTTTCTGTACAACCTTCAACACCTACACAGATGCAAACTCAAAATGCACTTCAGATGCATCAAAACATAAACCACCTTCGTGCAAGCTATCCATCCAACAACATGCCTTCCTCTCCCGTGTATAAATCCTCACCATACGGGTTCGACTCATCGGCTGCTGTGGCTGCCGCAATGATGAATTCCAGGTCTGCCGCCTTCGCAAAGAGAAGCCAAAGTTTTATTGATCGCGGCGCTGCAACACACCATATCGGACTGTCATCACCTTCCAACCCCTCCTGTAAGGTGTCCTCTACCCTTTCCGATTGGGGTTCCCCAACCGGGAAGGTGGACTGGGGTTTAAACGGAGATGAGCTGAACAAGCTGAGGAAATCTGCTTCATTCGGGTACAGAAACAATGGGGCTTCATCCCCTATGGCACAACCAGAACATGTTGAGCCGGATGTTTCATGGGTTCATTCGATGGTTAGAGAAGAGAGGACTGAGAGATTTGGTGTTGAGAAGCCGCAACAGCAGCAACAGCACTATGATCTCAGTAAAGAGACGCTTCCACCGTGGCTGGAGCAACTGTACATAGAGCAGCAGAAGCAAATGGTAGCATAA 1989 0.4691 MCSGSKSNLSTSNQVMESEFQKILLEFSAFDDVEAFKREVEEKGLDVNEAVFWYGRRIGSKKMGYEKRTPLMIASLFGSTRVVKYIIEIGNVDVNKACGSDGVTALHCAVAGGSESSLEIVKLLLDAGADADCLDAIGNKPVTLIAPAFNPLSNSRRKALEFFLRGGQGDQQLYEIEQLPEKKEGSDKKEYPVDISLPDINNGVYGTDDFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGTCQKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCNRKVCFFAHKPEELRPVYASTGSAMPSPKSYAASALDMTSMSPLSLSSSLPMSTVSTPPMSPLAASSSPKSGNMWQNKINFTPPSLQLPGSRLKAALSARDLNLEMELLGLESPSHARQQQQQQQLKEEIARISSPSFRSRMGDLNPTNLDELLASADASVLSQLHGLSVQPSTPTQMQTQNALQMHQNINHLRASYPSNNMPSSPVYKSSPYGFDSSAAVAAAMMNSRSAAFAKRSQSFIDRGAATHHIGLSSPSNPSCKVSSTLSDWGSPTGKVDWGLNGDELNKLRKSASFGYRNNGASSPMAQPEHVEPDVSWVHSMVREERTERFGVEKPQQQQQHYDLSKETLPPWLEQLYIEQQKQMVA* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1339 662 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 254 274 IPR000571 GO:0046872
Lan9g1339 662 SMART c3hfinal6 284 307 IPR000571 GO:0046872
Lan9g1339 662 SMART c3hfinal6 249 275 IPR000571 GO:0046872
Lan9g1339 662 ProSiteProfiles Ankyrin repeat region circular profile. 101 135 - -
Lan9g1339 662 Gene3D - 3 174 IPR036770 -
Lan9g1339 662 Pfam Ankyrin repeats (3 copies) 62 132 IPR002110 GO:0005515
Lan9g1339 662 Gene3D - 251 312 - -
Lan9g1339 662 PANTHER UNKEMPT FAMILY MEMBER 19 660 IPR045234 -
Lan9g1339 662 ProSiteProfiles Zinc finger C3H1-type profile. 249 276 IPR000571 GO:0046872
Lan9g1339 662 ProSiteProfiles Ankyrin repeat profile. 101 136 IPR002110 GO:0005515
Lan9g1339 662 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 19 660 - -
Lan9g1339 662 SUPERFAMILY Ankyrin repeat 24 145 IPR036770 -
Lan9g1339 662 SMART ANK_2a 101 133 IPR002110 GO:0005515
Lan9g1339 662 SMART ANK_2a 66 96 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1339 Lan-Chr9 20576811 20579651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1339 24 656 C2H2 Transcription Factor Family AT5G12850 40.311 1.45e-143 433
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan9g1339 Ank_2 6.3e-10 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1339 - - gmx:100783376 978.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1145 2 22703140 22706099 Lan9g1339 9 20576811 20579651 LSH
Lan11g0239 11 1526589 1528360 Lan9g1339 9 20576811 20579651 LSH