Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1328 ATGGCTTCCACTTACAGAGACCGCACCTCGGAGTTTCATTCATTGTCTCTGACTCTTAAGAAAATTGTTGGATCTACTCCCACACCCTCTAACCAAAATGCTCCTTCCATATCCCTTTATCAACAATCCGATTTCAACCGAAAAGCTTCCCGAATCGGTGTTGGTATTTACGATACCTCCCAGAAAATCGCAAGGCTCGCTCAACTGGCGAAGAAATCATCCATGTTCAATGACCCCATAATGGAAATTCAGGAATTGACAATTCTGATTAAGAATGACATCACCGCGTTGGACTCGGCTCTTAAGGATTTGCAAAACATTCAGAATATGGAGATAGTTGATGGGAATTTCTCTCAGGATAGGATTGTTCATTCTAATGCTGTTTGTGATGACTTGAAGGCCAAACTCATGGGTGCTACCAAACAACTTCAAGATGTTTTAACTACTAGGACAGAGAATATCAAGGCTCATGAGAACAGGAGGCAGATATTTTCCAAGAATGCGGCGCCGAGGGATAACCCTTTTCAGCATCAACCAAAGCCAGTCACTGAGCCACCCCCTTGGTCAAATTCATCAAATGCTTCTGAGAGTTTACAACAAGCATCAACGTTACCATCAAATGGAGTTCCAGCCAGTAATCAACTAAGACGAAGGTTAGCTGTGGACAACACTCCATCCCAGCAAATGGAAATGTCTATGGTGCAGCAGGTTGTTCCTCAGCACGAAAACCATGCTCAAAGTCGGGCAAGTGCTCTACACAACGTGGAATCTACTATCACGGAACTTAGTGGGATTTTCACGAATTTGGCTACAATGGTTGCTCATCAAGGGGAACTAGCTATCAGGATTGATGACAACATGGATGAATCATTGGCAAATGTTGAAGGAGCTCATAGTTCTTTATTGAGGCATCTCAACCAAATATCATCAAATCGGTGGCTTCTAATCAAGATATTTGCCGTTCTGATTCTTTTTCTGATGATCTTCTTATTCTTCGTGGCCTAA 1005 0.4269 MASTYRDRTSEFHSLSLTLKKIVGSTPTPSNQNAPSISLYQQSDFNRKASRIGVGIYDTSQKIARLAQLAKKSSMFNDPIMEIQELTILIKNDITALDSALKDLQNIQNMEIVDGNFSQDRIVHSNAVCDDLKAKLMGATKQLQDVLTTRTENIKAHENRRQIFSKNAAPRDNPFQHQPKPVTEPPPWSNSSNASESLQQASTLPSNGVPASNQLRRRLAVDNTPSQQMEMSMVQQVVPQHENHAQSRASALHNVESTITELSGIFTNLATMVAHQGELAIRIDDNMDESLANVEGAHSSLLRHLNQISSNRWLLIKIFAVLILFLMIFLFFVA* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1328 334 MobiDBLite consensus disorder prediction 187 213 - -
Lan9g1328 334 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 242 304 IPR000727 -
Lan9g1328 334 PANTHER SYNTAXIN-31 4 333 - -
Lan9g1328 334 ProSitePatterns Syntaxin / epimorphin family signature. 248 287 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lan9g1328 334 CDD SNARE_syntaxin5 245 329 - -
Lan9g1328 334 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 6 20 IPR021538 -
Lan9g1328 334 Pfam SNARE domain 279 330 IPR000727 -
Lan9g1328 334 MobiDBLite consensus disorder prediction 153 213 - -
Lan9g1328 334 SUPERFAMILY t-snare proteins 43 297 IPR010989 GO:0016020|GO:0016192
Lan9g1328 334 PANTHER SYNTAXIN 4 333 IPR045242 -
Lan9g1328 334 Gene3D - 40 297 - -
Lan9g1328 334 SMART tSNARE_6 237 304 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1328 Lan-Chr9 20506317 20511040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g1328 1 334 SNARE and Associated Proteins AT5G05760 66.372 2.27e-146 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1328 K08490 - gmx:100777383 492.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1135 2 22604336 22605163 Lan9g1328 9 20506317 20511040 LSH